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DuckDB-powered pangenome Swiss Army knife
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Author
2026-08-25
Only require documentation of non-hidden options.
Arun Isaac
2026-08-25
Do not hide -S, --summarize flags.
Arun Isaac
2026-08-25
Remove threads variable name.
Arun Isaac
2026-08-25
Add -P, --progress flags.
Arun Isaac
2026-08-21
Expose domagi script visible with pre-inst-env.
Arun Isaac
2026-08-21
Build duckdb database only once in a setup fixture.
Arun Isaac
2026-08-21
Symlink guix.scm to domagi-package.scm.
Arun Isaac
2026-08-21
Update odgi to 0.9.4.
Arun Isaac
2026-08-21
Initialize schema in crush subcommand.
Arun Isaac
2026-08-21
Add chop subcommand.
Arun Isaac
2026-08-21
When testing, canonicalize links before comparing them.
Arun Isaac
2026-08-21
Canonicalize L line when building database.
Arun Isaac
2026-08-15
Error out if user-specified path does not exist.
Arun Isaac
2026-08-15
Add CI badges to README.
Arun Isaac
2026-08-15
Add domagi overlap --paths.
Arun Isaac
2026-08-15
Document website building instructions.
Arun Isaac
2026-08-15
When sorting a data frame by a single column, only pass in a string.
Arun Isaac
2026-08-15
Add domagi overlap.
Arun Isaac
2026-08-14
Move path_length to schema as view.
Arun Isaac
2026-08-14
Remove TODO note about synopses.
Arun Isaac
2026-08-14
Reverse complement sequences as required in FASTA.
Arun Isaac
2026-08-14
Fix paths --fasta SQL query.
Arun Isaac
2026-08-14
Test paths --fasta.
Arun Isaac
2026-08-14
Add manual to website.
Arun Isaac
2026-08-13
Add manual.
Arun Isaac
2026-08-13
Add website.
Arun Isaac
2026-08-13
Add introductory paragraph to README.
Arun Isaac
2026-08-13
Add short_help for subcommands.
Arun Isaac
2026-07-27
Make git repo a Guix channel.
Arun Isaac
2026-07-27
Add hacking instructions.
Arun Isaac
2026-07-27
Initial commit
Arun Isaac