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Diffstat (limited to 'tests')
| -rw-r--r-- | tests/test_domagi.py | 17 |
1 files changed, 17 insertions, 0 deletions
diff --git a/tests/test_domagi.py b/tests/test_domagi.py index d678a3f..757d1ec 100644 --- a/tests/test_domagi.py +++ b/tests/test_domagi.py @@ -214,6 +214,23 @@ def test_domagi_overlap(tmp_path, test_data_file, expected_output): .sort_values(by=["#path", "path.touched"], ignore_index=True), check_dtype=False) + # Test passing in the paths through a file. + paths_file = tmp_path / "paths" + with open(paths_file, "w") as file: + for path in paths: + print(path, file=file) + result = runner.invoke(main, ["overlap", + "--db", duckdb_path, + "--paths", paths_file]) + assert result.exit_code == 0 + assert_frame_equal(pd.read_csv(expected_output, sep="\t") + .sort_values(by=["#path", "path.touched"], + ignore_index=True), + pd.read_csv(io.StringIO(result.stdout), + sep="\t") + .sort_values(by=["#path", "path.touched"], + ignore_index=True), + check_dtype=False) @pytest.mark.parametrize("test_data_file, expected_output", [(Path("test-data/test1.gfa"), |