ccwl - Concise Common Workflow Language (mirror of https://github.com/arunisaac/ccwl)

Age	Commit message (Collapse)	Author
2021-10-12	tests: Fix quoting of type.	Arun Isaac
	* tests/ccwl.scm ("stdin input should not have inputBinding"): Fix quoting of type File.
2021-10-11	ccwl: Factorize out CWL generation code to separate file.	Arun Isaac
	This factorization is required to support other compilation targets such as graphviz, bash, scheme, etc. * ccwl/cwl.scm: New file. * Makefile.am (SOURCES): Register it. * ccwl/ccwl.scm (ccwl): Export command?, command-inputs, command-outputs, command-args, command-stdin, command-other, workflow?, workflow-steps, workflow-inputs, workflow-outputs, workflow-other, input?, input-id, input-type, input-label, input-default, input-position, input-prefix, input-other, output?, output-id, output-type, output-binding, output-source, output-other, step?, step-id, step-run, step-in, step-out, unspecified-default?. (<workflow>): New type. (filter-alist): Move to cwl.scm. (make-workflow): Refactor into workflow->cwl-scm in cwl.scm. (output->cwl): Move to cwl.scm as output->cwl-scm. (command->cwl): Move to cwl.scm as command->cwl-scm. (workflow-steps): Rename to collect-steps. Clarify docstring. (workflow): Use collect-steps instead of workflow-steps. Explicitly pass empty list as other argument of make-workflow. Add TODO note to implement it properly. * scripts/ccwl.in: Import (ccwl cwl) instead of (ccwl yaml). Use workflow->cwl instead of scm->yaml. * tests/ccwl.scm ("stdin input should not have inputBinding"): Use command->cwl-scm from (ccwl cwl) instead of command->cwl from (ccwl ccwl).
2021-10-04	ccwl: Support #:allow-other-keys in lambda and syntax-lambda.	Arun Isaac
	* ccwl/utils.scm (lambda): Support #:allow-other-keys. Update docstring. (syntax-lambda): Update docstring. * tests/utils.scm ("Allow other keys in lambda", "Allow other keys in syntax-lambda"): New tests.
2021-10-04	ccwl: Error out on invalid keywords to lambda**.	Arun Isaac
	* ccwl/utils.scm (lambda*): Error out on invalid keywords (that is, keywords other than #:key, #:key and #:allow-other-keys). * tests/utils.scm ("lambda** should error out on unrecognized keywords in arguments"): New test.
2021-10-04	tests: Remove stray syntax-lambda** form.	Arun Isaac
	* tests/utils.scm: Remove stray syntax-lambda** form.
2021-07-27	ccwl: Make syntax-lambda more like lambda.	Arun Isaac
	I have tripped up several times on the differences between lambda and syntax-lambda. No longer! Making syntax-lambda as close as possible to lambda makes the code much more readable and align better with common sense. * ccwl/utils.scm (syntax-lambda*): Do not ignore the first identifier. Accept multiple values as arguments, not a single syntax object. ccwl/ccwl.scm (command): Update use of syntax-lambda*. tests/utils.scm ("syntax-lambda", "syntax-lambda with default values"): Update tests.
2021-07-20	ccwl: Set default value of lambda** n-ary arguments to '().	Arun Isaac
	* ccwl/utils.scm (lambda): Set default value of lambda n-ary arguments to the empty list. Document this in the docstring. * tests/utils.scm ("default value of lambda unary argument should be #f", "default value of lambda n-ary argument should be the empty list"): New tests.
2021-07-20	ccwl: Document syntax-lambda** support for default arguments.	Arun Isaac
	* ccwl/utils.scm (syntax-lambda*): Add example to docstring documenting support for default arguments. tests/utils.scm ("syntax-lambda** with default values"): New test.
2021-07-20	ccwl: Support default values for arguments in lambda**.	Arun Isaac
	* ccwl/utils.scm (lambda*): Support default values for arguments, both unary and n-ary. tests/utils.scm ("lambda** with default values"): New test.
2021-07-20	tests: Add tests for ccwl/utils.scm.	Arun Isaac
	* tests/utils.scm: New file. * Makefile.am (SCM_TESTS): Register it.
2021-07-19	tests: Fix order of arguments to test-equal.	Arun Isaac
	The expected value should be the first argument to test-equal. Getting this order wrong messes up the test logs. * tests/yaml.scm ("dictionary entries with empty arrays and dictionaries for values must render on the same line"): Fix order of arguments to test-equal.
2021-07-19	tests: Fix indentation.	Arun Isaac
	* tests/ccwl.scm ("stdin input should not have inputBinding"): Fix indentation.
2021-07-02	tests: Ensure stdin input has no inputBinding.	Arun Isaac
	* tests/ccwl.scm: Import (ccwl ccwl) ("stdin input should not have inputBinding"): New test.
2021-07-02	tests: Remove unnecessary import.	Arun Isaac
	* tests/ccwl.scm: Do not import (srfi srfi-71).
2021-04-26	Escape asterisk characters in scm->yaml.	Arun Isaac
	* ccwl/yaml.scm (display-atom): Escape asterisk characters. * tests/yaml.scm ("strings with asterisk characters should be escaped"): New test.
2021-04-26	Test if scm->yaml escapes hyphen characters.	Arun Isaac
	* tests/yaml.scm ("strings with hyphen characters should be escaped"): New test.
2021-04-26	Remove deprecated break-pair tests.	Arun Isaac
	* tests/ccwl.scm (break-pair): Delete function. ("break-pair", "break-pair: check last elemet handling"): Delete tests.
2021-04-17	Add copyright section to test files.	Arun Isaac
	* tests/ccwl.scm, tests/yaml.scm: Add copyright section.
2021-02-27	Add break-pair utility.	Arun Isaac
	* ccwl/ccwl.scm (break-pair): New function. * tests/ccwl.scm: New file. * tests/ccwl.scm ("break-pair", "break-pair: check last elemet handling"): New test cases.
2021-02-27	Display dictionary entries with empty values on the same line.	Arun Isaac
	* ccwl/yaml.scm (display-dictionary-entry): If value is an empty array or dictionary, display it on the same line. (scm->yaml): Go to next line after printing empty array. * tests/yaml.scm: New file. * tests/yaml.scm ("dictionary entries with empty arrays and dictionaries for values must render on the same line"): New test case.