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* ccwl/ccwl.scm (function-inputs): New function.
(function-input-keys): Use function-inputs.
(collect-steps): Do not error out on steps with unspecified default
arguments.
* tests/ccwl.scm (print-with-default): New variable.
("allow steps with unspecified default arguments"): New test.
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* tests/ccwl.scm (print): New variable.
("rename should work even on the final output of a workflow"): New
test.
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* ccwl/ccwl.scm (command): Raise &ccwl-violation conditions on syntax
errors.
* tests/ccwl.scm ("command, when passed positional arguments, must
raise a &ccwl-violation condition", "command, when passed an
unrecognized keyword, must raise a &ccwl-violation condition",
"command, when passed multiple arguments to a unary keyword, must
raise a &ccwl-violation condition"): New tests.
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* ccwl/ccwl.scm (output): Raise &ccwl-violation conditions on syntax
errors.
* tests/ccwl.scm (output): New function.
("output, when passed more than one positional argument, must raise a
&ccwl-violation condition", "output, when passed an unrecognized
keyword, must raise a &ccwl-violation condition", "output, when passed
multiple arguments to a unary keyword, must raise a &ccwl-violation
condition"): New tests.
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* ccwl/ccwl.scm: Import (rnrs conditions), (rnrs exceptions) and (ccwl
conditions).
(input, input-spec-id): Raise &ccwl-violation
conditions on syntax errors.
* tests/ccwl.scm: Import (rnrs exceptions) and (ccwl conditions).
(input): New function.
("input, when passed more than one positional argument, must raise a
&ccwl-violation condition", "input, when passed an unrecognized
keyword, must raise a &ccwl-violation condition", "input, when passed
multiple arguments to a unary keyword, must raise a &ccwl-violation
condition"): New tests.
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plist->alist is not used anywhere. pairify is quite sufficient to take
on its functionality.
* ccwl/utils.scm (plist->alist): Delete function.
* tests/utils.scm ("plist->alist"): Delete test.
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* ccwl/utils.scm (syntax-lambda**): Document default default value.
* tests/utils.scm ("default default value of syntax-lambda** unary
argument should be #f", "default default value of syntax-lambda**
n-ary argument should be the empty list"): New tests.
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* ccwl/utils.scm (lambda**): Change "default value" to "default
default value" in docstring.
* tests/utils.scm ("default value of lambda** unary argument should be
#f", "default value of lambda** n-ary argument should be the empty
list"): Change "default value" to "default default value".
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This is a purely cosmetic change just to keep definitions outside the
test cases.
* tests/utils.scm (plist-ref): Move ahead of test-begin.
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* ccwl/conditions.scm (&unrecognized-keyword-assertion,
&invalid-keyword-arity-assertion,
&invalid-positional-arguments-arity-assertion): New conditions.
* ccwl/utils.scm: Import (rnrs conditions), (rnrs exceptions)
and (ccwl conditions).
(group-keyword-arguments): Raise &invalid-keyword-arity-assertion on
error.
(lambda**, syntax-lambda**): Raise &unrecognized-keyword-assertion,
&invalid-keyword-arity-assertion and
&invalid-positional-arguments-arity-assertion on error.
* tests/utils.scm: Import (rnrs conditions), (rnrs exceptions), (srfi
srfi-1) and (ccwl conditions).
("lambda** should raise an &unrecognized-keyword-assertion on
unrecognized keywords in arguments with syntax objects as irritants"):
Check for &unrecognized-keyword-assertion.
("Unrecognized keyword argument passed to lambda** should raise an
&unrecognized-keyword-assertion condition", "Unary lambda** keyword
argument passed multiple arguments should raise an
&invalid-keyword-arity-assertion condition", "Wrong number of
positional arguments to lambda** should raise an
&invalid-positional-arguments-arity-assertion condition",
"syntax-lambda** should raise an &unrecognized-keyword-assertion on
unrecognized keywords in arguments", "Unrecognized keyword argument
passed to syntax-lambda** should raise an
&unrecognized-keyword-assertion condition with syntax objects as
irritants", "Unary syntax-lambda** keyword argument passed multiple
arguments should raise an &invalid-keyword-arity-assertion condition",
"Wrong number of positional arguments to syntax-lambda** should raise
an &invalid-positional-arguments-arity-assertion condition"): New
tests.
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@@ is shorter and looks neater with fewer quotes.
* tests/ccwl.scm ("stdin input should not have inputBinding"),
tests/utils.scm ("unsyntax-keywords"): Use @@ instead of module-ref
and resolve-module.
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* ccwl/graphviz.scm (<graph-port>): New type.
(serialize): Support <graph-port> objects.
* tests/graphviz.scm (graph-port): New function.
("serialize ports correctly"): New test case.
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* ccwl/graphviz.scm: Import (ice-9 string-fun).
(serialize): When quoting strings, escape only the double quote
character.
* tests/graphviz.scm ("do not escape backslashes"): New test case.
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* ccwl/graphviz.scm (<html-string>): New type.
(escape-id): Delete function.
(serialize): New function.
(graph->dot): Use serialize instead of escape-id.
* tests/graphviz.scm: New file.
("serialize HTML strings correctly"): New test case.
* Makefile.am (SCM_TESTS): Register it.
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This is a follow-up to 0b359cf2c32cde81b4311d55273c8f6c14ca6b93 where
this file should have been included.
* tests/input-output-parameters.cwl: New file.
* Makefile.am (EXTRA_DIST): Register it.
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* ccwl/ccwl.scm: Import (yaml). Export cwl-workflow?, cwl-workflow,
cwl-workflow-file, cwl-workflow-inputs and cwl-workflow-outputs.
(<cwl-workflow>): New type.
(cwl-workflow, function-input-keys, function-outputs,
function-object): New functions.
(command-input-keys, command-object): Delete functions.
(collect-steps): Replace command-object with function-object,
command-input-keys with function-input-keys and command-outputs with
function-outputs.
* ccwl/cwl.scm (workflow->cwl-scm): Handle <cwl-workflow> objects.
* tests/ccwl.scm ("read all forms of inputs and outputs from a CWL
workflow"): New test.
* guix.scm: Import (gnu packages guile-xyz) and (guix utils).
(guile-libyaml): New variable.
(ccwl)[inputs]: Add guile-libyaml.
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* tests/ccwl.scm ("stdin input should not have inputBinding"): Fix
quoting of type File.
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This factorization is required to support other compilation targets
such as graphviz, bash, scheme, etc.
* ccwl/cwl.scm: New file.
* Makefile.am (SOURCES): Register it.
* ccwl/ccwl.scm (ccwl): Export command?, command-inputs,
command-outputs, command-args, command-stdin, command-other,
workflow?, workflow-steps, workflow-inputs, workflow-outputs,
workflow-other, input?, input-id, input-type, input-label,
input-default, input-position, input-prefix, input-other, output?,
output-id, output-type, output-binding, output-source, output-other,
step?, step-id, step-run, step-in, step-out, unspecified-default?.
(<workflow>): New type.
(filter-alist): Move to cwl.scm.
(make-workflow): Refactor into workflow->cwl-scm in cwl.scm.
(output->cwl): Move to cwl.scm as output->cwl-scm.
(command->cwl): Move to cwl.scm as command->cwl-scm.
(workflow-steps): Rename to collect-steps. Clarify docstring.
(workflow): Use collect-steps instead of workflow-steps. Explicitly
pass empty list as other argument of make-workflow. Add TODO note to
implement it properly.
* scripts/ccwl.in: Import (ccwl cwl) instead of (ccwl yaml). Use
workflow->cwl instead of scm->yaml.
* tests/ccwl.scm ("stdin input should not have inputBinding"): Use
command->cwl-scm from (ccwl cwl) instead of command->cwl from (ccwl
ccwl).
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* ccwl/utils.scm (lambda**): Support #:allow-other-keys. Update
docstring.
(syntax-lambda**): Update docstring.
* tests/utils.scm ("Allow other keys in lambda**", "Allow other keys
in syntax-lambda**"): New tests.
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* ccwl/utils.scm (lambda**): Error out on invalid keywords (that is,
keywords other than #:key, #:key* and #:allow-other-keys).
* tests/utils.scm ("lambda** should error out on unrecognized keywords
in arguments"): New test.
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* tests/utils.scm: Remove stray syntax-lambda** form.
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I have tripped up several times on the differences between lambda**
and syntax-lambda**. No longer! Making syntax-lambda** as close as
possible to lambda** makes the code much more readable and align
better with common sense.
* ccwl/utils.scm (syntax-lambda**): Do not ignore the first
identifier. Accept multiple values as arguments, not a single syntax
object.
* ccwl/ccwl.scm (command): Update use of syntax-lambda**.
* tests/utils.scm ("syntax-lambda**", "syntax-lambda** with default
values"): Update tests.
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* ccwl/utils.scm (lambda**): Set default value of lambda** n-ary
arguments to the empty list. Document this in the docstring.
* tests/utils.scm ("default value of lambda** unary argument should be
#f", "default value of lambda** n-ary argument should be the empty
list"): New tests.
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* ccwl/utils.scm (syntax-lambda**): Add example to docstring
documenting support for default arguments.
* tests/utils.scm ("syntax-lambda** with default values"): New test.
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* ccwl/utils.scm (lambda**): Support default values for arguments,
both unary and n-ary.
* tests/utils.scm ("lambda** with default values"): New test.
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* tests/utils.scm: New file.
* Makefile.am (SCM_TESTS): Register it.
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The expected value should be the first argument to test-equal. Getting
this order wrong messes up the test logs.
* tests/yaml.scm ("dictionary entries with empty arrays and
dictionaries for values must render on the same line"): Fix order of
arguments to test-equal.
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* tests/ccwl.scm ("stdin input should not have inputBinding"): Fix
indentation.
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* tests/ccwl.scm: Import (ccwl ccwl)
("stdin input should not have inputBinding"): New test.
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* tests/ccwl.scm: Do not import (srfi srfi-71).
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* ccwl/yaml.scm (display-atom): Escape asterisk characters.
* tests/yaml.scm ("strings with asterisk characters should be
escaped"): New test.
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* tests/yaml.scm ("strings with hyphen characters should be escaped"):
New test.
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* tests/ccwl.scm (break-pair): Delete function.
("break-pair", "break-pair: check last elemet handling"): Delete
tests.
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* tests/ccwl.scm, tests/yaml.scm: Add copyright section.
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* ccwl/ccwl.scm (break-pair): New function.
* tests/ccwl.scm: New file.
* tests/ccwl.scm ("break-pair", "break-pair: check last elemet
handling"): New test cases.
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* ccwl/yaml.scm (display-dictionary-entry): If value is an empty array
or dictionary, display it on the same line.
(scm->yaml): Go to next line after printing empty array.
* tests/yaml.scm: New file.
* tests/yaml.scm ("dictionary entries with empty arrays and
dictionaries for values must render on the same line"): New test case.
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