ccwl - Concise Common Workflow Language (mirror of https://github.com/arunisaac/ccwl)

Age	Commit message (Collapse)	Author
2021-12-10	guix.scm: Base ccwl package off upstream Guix package.	Arun Isaac
	* guix.scm: Do not import (gnu packages graphviz), (gnu packages guile), (gnu packages guile-xyz), (gnu packages pkg-config), (gnu packages skribilo), (gnu packages texinfo), (guix build-system gnu), (guix licenses) and (guix utils). Import (gnu packages bioinformatics) with the guix: prefix. (ccwl): Base off upstream Guix package.
2021-11-29	guix.scm: Add a wrap phase.	Arun Isaac
	* guix.scm (ccwl)[arguments]: Import target-guile-effective-version from (guix build guile-build-system). Add a wrap phase.
2021-11-25	guix.scm: Bump version.	Arun Isaac
	* guix.scm (ccwl)[version]: Set to 0.2.0.
2021-11-25	guix.scm: Use the upstream Guix guile-libyaml package.	Arun Isaac
	* guix.scm: Do not prefix import of (gnu packages guile-xyz) with guix: (guile-libyaml): Delete variable.
2021-11-19	guix.scm: Replace guix environment with guix shell.	Arun Isaac
	guix environment has been superseded by guix shell. * guix.scm: Replace guix environment with guix shell.
2021-11-02	ccwl: Support external CWL workflows.	Arun Isaac
	* ccwl/ccwl.scm: Import (yaml). Export cwl-workflow?, cwl-workflow, cwl-workflow-file, cwl-workflow-inputs and cwl-workflow-outputs. (<cwl-workflow>): New type. (cwl-workflow, function-input-keys, function-outputs, function-object): New functions. (command-input-keys, command-object): Delete functions. (collect-steps): Replace command-object with function-object, command-input-keys with function-input-keys and command-outputs with function-outputs. * ccwl/cwl.scm (workflow->cwl-scm): Handle <cwl-workflow> objects. * tests/ccwl.scm ("read all forms of inputs and outputs from a CWL workflow"): New test. * guix.scm: Import (gnu packages guile-xyz) and (guix utils). (guile-libyaml): New variable. (ccwl)[inputs]: Add guile-libyaml.
2021-11-02	guix.scm: Define ccwl as a separate variable.	Arun Isaac
	This make it easier to refer to it in the changelog. * guix.scm (ccwl): New variable. Return ccwl.
2021-10-19	guix.scm: Use git-predicate from (guix git-download).	Arun Isaac
	* guix.scm: Do not import (srfi srfi-1), (srfi srfi-26), (ice-9 match), (ice-9 popen), (ice-9 rdelim) and (guix build utils). Import (guix git-download). (git-file?): Delete function. Use git-predicate from (guix git-download) instead of git-file?.
2021-07-03	guix.scm: Depend on cwltool and graphviz.	Arun Isaac
	* guix.scm: Import (gnu packages bioinformatics) and (gnu packages graphviz). (ccwl)[native-inputs]: Add cwltool and graphviz.
2021-07-03	guix.scm: Import (gnu packages skribilo).	Arun Isaac
	This is a follow-up to commit bf485dd43386305177a2ba3ea1a5ee7e164984c6 where this import was missed out. * guix.scm: Import (gnu packages skribilo).
2021-06-15	doc: Move documentation from texinfo to skribilo.	Arun Isaac
	* doc/ccwl.texi: Delete file. * ccwl/skribilo.scm, doc/ccwl.skb, doc/capture-output-file-with-parameter-reference.out, doc/capture-output-file-with-parameter-reference.scm, doc/capture-output-file.out, doc/capture-output-file.scm, doc/capture-stdout.out, doc/capture-stdout.scm, doc/checksum.out, doc/checksum.scm, doc/decompress-compile-run.out, doc/decompress-compile-run.scm, doc/hello-world.out, doc/hello-world.scm, doc/hello.tar.out: New files. * configure.ac: Check for skribilo. * Makefile.am: Unregister doc/ccwl.texi. Add documentation build rules. * guix.scm (ccwl)[native-inputs]: Replace texinfo with skribilo. * .gitignore: Add doc/skribilo. Remove doc/version.texi, doc/.html, doc/.info.
2021-05-25	Add texinfo as a build dependency.	Arun Isaac
	* guix.scm: Import (gnu packages texinfo). Add texinfo to native-inputs.
2021-04-26	Add Guix build script.	Arun Isaac
	* guix.scm: New file.