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We will auto-connect inputs and outputs by matching their unique
identifiers.
* ccwl/ccwl.scm (<intermediate>): Delete type.
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* ccwl/ccwl.scm (<input>): Re-order <input> fields to be consistent
with its constructor.
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The user should not have to distinguish between regular outputs and
workflow outputs.
* ccwl/ccwl.scm (<output>): Add source field.
(output): Add source field to constructor.
(<workflow-output>): Delete type.
(workflow-output): Delete function.
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Functional setters from (srfi srfi-9 gnu) are very useful.
* ccwl/ccwl.scm (<input>, unspecified-default, <output>,
<intermediate>, <workflow-output>, <step>): Redefine using SRFI-9
records.
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* ccwl/ccwl.scm (parse-command): Rewrite using break-pair.
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* ccwl/ccwl.scm (break-pair): New function.
* tests/ccwl.scm: New file.
* tests/ccwl.scm ("break-pair", "break-pair: check last elemet
handling"): New test cases.
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* ccwl/yaml.scm (display-dictionary-entry): If value is an empty array
or dictionary, display it on the same line.
(scm->yaml): Go to next line after printing empty array.
* tests/yaml.scm: New file.
* tests/yaml.scm ("dictionary entries with empty arrays and
dictionaries for values must render on the same line"): New test case.
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* ccwl/yaml.scm (scm->yaml-string): New function.
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ccwl stands for Concise Common Workflow Language.
* generate-cwl/ccwl.scm: Move to ccwl/ccwl.scm.
* generate-cwl/yaml.scm: Move to ccwl/yaml.scm.
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* generate-cwl/generate-cwl.scm: Export intermediate and clitool-step.
(<intermediate>): New type.
(clitool-step): New function.
(workflow): Pull out inputs and intermediate put into <step> objects
by clitool-step.
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