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2021-06-19.gitignore: Add files.Arun Isaac
* .gitignore: Add build-aux/test-driver.scm and website.
2021-06-19Makefile: Let info and html targets depend on skribilo config.Arun Isaac
* Makefile.am ($(SKRIBILO_BUILD_DIR)/ccwl.info, $(SKRIBILO_BUILD_DIR)/ccwl.html): Depend on skribilo config ccwl/skribilo.scm.
2021-06-19doc: Link to source for pipe and tee.Arun Isaac
* doc/ccwl.skb (Tutorial)[Workflow with multiple steps]: Link to source for pipe and tee.
2021-06-19ccwl: Add source links.Arun Isaac
* ccwl/skribilo.scm: Import (rnrs io ports), (ice-9 match), (ice-9 regex) and (srfi srfi-171). (%source-uri-base): New variable. (source-ref): New public function.
2021-06-19configure: Search for emacs.Arun Isaac
* configure.ac: Search for emacs. * Makefile.am: Use EMACS set by configure.
2021-06-19Makefile: Use MKDIR_P instead of `mkdir -p'.Arun Isaac
* Makefile.am (website/index.html): Use MKDIR_P instead of `mkdir -p'.
2021-06-19Makefile: Delete manual directory before rebuilding.Arun Isaac
* Makefile.am (website/manual/dev/en): Delete directory before rebuilding.
2021-06-19website: Move CSS into the website directory.Arun Isaac
That way, there is no need to copy it when building the website. * Makefile.am (website/style.css): Delete target. (website): Do not depend on the website/style.css target. (clean-local): Clean up only website/index.html and website/manual/dev/en, not the entire website directory. * style.css: Move to website/style.css.
2021-06-15website: Make SVG badges clickable.Arun Isaac
* style.css (object): Set pointer-events to none.
2021-06-15doc: Move documentation from texinfo to skribilo.Arun Isaac
* doc/ccwl.texi: Delete file. * ccwl/skribilo.scm, doc/ccwl.skb, doc/capture-output-file-with-parameter-reference.out, doc/capture-output-file-with-parameter-reference.scm, doc/capture-output-file.out, doc/capture-output-file.scm, doc/capture-stdout.out, doc/capture-stdout.scm, doc/checksum.out, doc/checksum.scm, doc/decompress-compile-run.out, doc/decompress-compile-run.scm, doc/hello-world.out, doc/hello-world.scm, doc/hello.tar.out: New files. * configure.ac: Check for skribilo. * Makefile.am: Unregister doc/ccwl.texi. Add documentation build rules. * guix.scm (ccwl)[native-inputs]: Replace texinfo with skribilo. * .gitignore: Add doc/skribilo. Remove doc/version.texi, doc/*.html, doc/*.info.
2021-06-10build-aux: Do not override org-html--svg-image.Arun Isaac
SVG image export works correctly out of the box in org. * build-aux/build-home-page.el (org-html--svg-image): Delete function.
2021-06-10pre-inst-env: Handle absent environment variables.Arun Isaac
* pre-inst-env.in (prepend-path-env!): Handle case when environment variable is absent and getenv returns #f.
2021-06-10README: Do not use org macros.Arun Isaac
Unfortunately, GitHub's org exporter does not support macros. * README.org (ci-badge): Delete macro. Replace ci-badge macro invocations with expansions.
2021-06-10README: Add continuous integration badges.Arun Isaac
* README.org (ci-badge): New macro. Add continuous integration badges. * build-aux/build-home-page.el (org-html--svg-image): Override org-html--svg-image to export svg using an img tag instead of an object tag.
2021-06-01Do not export obsolete functions.Arun Isaac
* ccwl/ccwl.scm: Do not export step and pipeline.
2021-06-01Introduce new command definition syntax.Arun Isaac
* ccwl/ccwl.scm: Do not export input and output. (<input>): Delete source field. Add position field. (input): Accept position and prefix fields in constructor. Do not initialize non-existent source field. (<command>): Delete additional-inputs field. Add inputs field. Delete set-command-outputs and set-command-stdin setters. (command): Rewrite as macro that accepts new command definition syntax. (<cli-element>): Delete type. (command->cwl): Generate CWL from new <command> type. (command-input-keys): Simplify to support new <command> type.
2021-06-01Remove unused setters, appenders, etc.Arun Isaac
* ccwl/ccwl.scm: Do not export input-with-prefix. (<input>): Delete set-input-prefix. (<step>): Delete set-step-run, set-step-id, set-step-out. (input-with-prefix, field-appender, modify-step-run, append-step-in, append-step-out, append-command-outputs): Delete functions.
2021-06-01In pipe, pass through input keys to all expressions.Arun Isaac
Earlier, the input keys would only be passed to the first expression. The second expression would only receive the output keys from the first expression. Passing input keys through to all expressions is a common use case, since expressions often need to access global inputs. If the original behavior is desired, we can always introduce a new construct, say `pipe-strict'. * ccwl/ccwl.scm (workflow-steps): In pipe, pass through input keys to all expressions.
2021-06-01Filter out global workflow inputs from workflow outputs.Arun Isaac
* ccwl/ccwl.scm (key->output): New function. (workflow-steps): Filter out global workflow inputs from workflow-outputs.
2021-06-01Add filter-mapi.Arun Isaac
* ccwl/utils.scm (filter-mapi): New public function.
2021-06-01Add syntax-lambda**.Arun Isaac
* ccwl/utils.scm (syntax-lambda**): New public macro.
2021-06-01Avoid datum->syntax.Arun Isaac
* ccwl/utils.scm (lambda**): Avoid using datum->syntax whenever possible.
2021-06-01Add unsyntax-keywords.Arun Isaac
* ccwl/utils.scm (unsyntax-keywords): New function.
2021-05-25Git ignore auto-generated doc files.Arun Isaac
* .gitignore: Add doc/*.html, doc/*.info, doc/.dirstamp and doc/stamp-vti.
2021-05-25Add texinfo as a build dependency.Arun Isaac
* guix.scm: Import (gnu packages texinfo). Add texinfo to native-inputs.
2021-05-25Add table of contents to manual.Arun Isaac
* doc/ccwl.texi: Add table of contents.
2021-05-25Add title and copyright pages to manual.Arun Isaac
* doc/ccwl.texi: Add title and copyright pages.
2021-05-25Hide Top node introduction in printed manual.Arun Isaac
* doc/ccwl.texi (Top): Move introduction into ifnottex block.
2021-05-25Mention version in manual.Arun Isaac
* doc/ccwl.texi: Include version.texi. (Top): Mention version.
2021-05-24Mention documentation in the README.Arun Isaac
* README.org (Documentation): New section.
2021-05-24Rewrite the README introduction to ccwl.Arun Isaac
* README.org: Rewrite introduction.
2021-05-24Add HTML manual to website.Arun Isaac
* Makefile.am (website/manual/dev/en): New target. (website): Require website/manual/dev/en. (AM_MAKEINFOHTMLFLAGS): Add --css-ref=/style.css to include CSS.
2021-05-24Add CSS to website.Arun Isaac
* Makefile.am (website/style.css): New target. (website): Require website/style.css. * style.css: New file.
2021-05-24Build website from README.org.Arun Isaac
* Makefile.am (website, website/index.html, clean-local): New targets. * build-aux/build-home-page.el: New file.
2021-05-24Add Contributing section to README.Arun Isaac
* README.org (Contributing): New section.
2021-05-24Downcase ccwl.Arun Isaac
* README.org: Downcase ccwl.
2021-05-24Do not compile pre-inst-env.Arun Isaac
* pre-inst-env.in: Add --no-auto-compile flag to shebang.
2021-05-24Remove unnecessary -s flag from shebang.Arun Isaac
* pre-inst-env.in, scripts/ccwl.in: Remove unnecessary -s flag from shebang.
2021-05-24Replace suffix rule with pattern rule.Arun Isaac
Suffix rules are deprecated and should not be used. Pattern rules are clearer and more general. * Makefile.am: Replace suffix rule to build scheme files with pattern rule.
2021-05-24Do not bind command line argument 0 in pre-inst-env.Arun Isaac
* pre-inst-env.in: Do not bind command line argument 0 to a variable.
2021-05-24Set PATH in pre-inst-env.Arun Isaac
* pre-inst-env.in: Append scripts directory to PATH.
2021-05-24Add "Workflow with multiple steps" to tutorial.Arun Isaac
* doc/ccwl.texi (Workflow with multiple steps): New node. (Tutorial): Link to "Workflow with multiple steps" node from menu.
2021-05-24Install ccwl script.Arun Isaac
* Makefile.am (bin_SCRIPTS): Add scripts/ccwl.
2021-05-24Add "Capturing output files" to tutorial.Arun Isaac
* doc/ccwl.texi (Capturing output files): New section. (Tutorial): Link to "Capturing output files" node from menu.
2021-05-24Add "Capturing stdout" section to tutorial.Arun Isaac
* doc/ccwl.texi (Capturing the standard output stream of a command): New section. * doc/ccwl.texi (Tutorial): Link to "Capturing stdout" node from menu.
2021-05-24Add "First example" section to tutorial.Arun Isaac
* doc/ccwl.texi (First example): New section. (Tutorial): Link to "First example" node from menu.
2021-05-24Add tutorial.Arun Isaac
* doc/ccwl.texi (Tutorial): New chapter. (Top): Link to "Tutorial" node from menu.
2021-05-23Unify command variable reference.Arun Isaac
* ccwl/ccwl.scm (command-variable, command-syntax->object): Delete functions. (command-object): New function. (workflow-steps): Use command-object instead of command-variable and command-syntax->object.
2021-05-23Add manual.Arun Isaac
* doc/ccwl.texi: New file. * Makefile.am (bin_SCRIPTS): Add doc/ccwl.texi.
2021-05-17Support simpler syntax for inputs with no properties.Arun Isaac
* ccwl/ccwl.scm (workflow): When input has no properties, support only specifying the symbol.
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