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-rw-r--r--doc/capture-output-file-with-parameter-reference.out24
-rw-r--r--doc/capture-output-file.out23
-rw-r--r--doc/capture-stdout.out21
-rw-r--r--doc/ccwl.skb4
-rw-r--r--doc/checksum.out49
-rw-r--r--doc/decompress-compile-run.out36
-rw-r--r--doc/hello-world.out13
-rw-r--r--doc/hello.c.gzbin0 -> 101 bytes
-rw-r--r--doc/hello.tarbin0 -> 10240 bytes
-rw-r--r--doc/hello.tar.out2
-rw-r--r--doc/hello.txt1
-rw-r--r--doc/pass-stdin.out13
12 files changed, 3 insertions, 183 deletions
diff --git a/doc/capture-output-file-with-parameter-reference.out b/doc/capture-output-file-with-parameter-reference.out
deleted file mode 100644
index 57369d2..0000000
--- a/doc/capture-output-file-with-parameter-reference.out
+++ /dev/null
@@ -1,24 +0,0 @@
-$ ccwl compile capture-output-file.scm > capture-output-file.cwl
-$ cwltool capture-output-file.cwl --archive hello.tar --extractfile hello.txt
-[workflow ] start
-[workflow ] starting step extract-specific-file
-[step extract-specific-file] start
-[job extract-specific-file] /tmp/751nydd1$ tar \
- --extract \
- --file \
- /tmp/1zzw2n6m/stgc851e003-b5bd-437e-844b-311f6f66a7f1/hello.tar \
- hello.txt
-[job extract-specific-file] completed success
-[step extract-specific-file] completed success
-[workflow ] completed success
-{
- "extracted-file": {
- "location": "file:///home/manimekalai/hello.txt",
- "basename": "hello.txt",
- "class": "File",
- "checksum": "sha1$a0b65939670bc2c010f4d5d6a0b3e4e4590fb92b",
- "size": 13,
- "path": "/home/manimekalai/hello.txt"
- }
-}
-Final process status is success
diff --git a/doc/capture-output-file.out b/doc/capture-output-file.out
deleted file mode 100644
index 32ee625..0000000
--- a/doc/capture-output-file.out
+++ /dev/null
@@ -1,23 +0,0 @@
-$ ccwl compile capture-output-file.scm > capture-output-file.cwl
-$ cwltool capture-output-file.cwl --archive hello.tar
-[workflow ] start
-[workflow ] starting step extract
-[step extract] start
-[job extract] /tmp/nrolttex$ tar \
- --extract \
- --file \
- /tmp/z7pp7qwh/stg3ac272aa-3459-4f20-a033-86f53ba72caf/hello.tar
-[job extract] completed success
-[step extract] completed success
-[workflow ] completed success
-{
- "extracted-file": {
- "location": "file:///home/manimekalai/hello.txt",
- "basename": "hello.txt",
- "class": "File",
- "checksum": "sha1$a0b65939670bc2c010f4d5d6a0b3e4e4590fb92b",
- "size": 13,
- "path": "/home/manimekalai/hello.txt"
- }
-}
-Final process status is success
diff --git a/doc/capture-stdout.out b/doc/capture-stdout.out
deleted file mode 100644
index 19568af..0000000
--- a/doc/capture-stdout.out
+++ /dev/null
@@ -1,21 +0,0 @@
-$ ccwl compile capture-stdout.scm > capture-stdout.cwl
-$ cwltool capture-stdout.cwl --message "Hello World!"
-[workflow ] start
-[workflow ] starting step print
-[step print] start
-[job print] /tmp/7zksx3xm$ echo \
- 'Hello World!' > /tmp/7zksx3xm/51fe79d15e7790a9ded795304220d7a44aa84b48
-[job print] completed success
-[step print] completed success
-[workflow ] completed success
-{
- "printed-message": {
- "location": "file:///home/manimekalai/51fe79d15e7790a9ded795304220d7a44aa84b48",
- "basename": "51fe79d15e7790a9ded795304220d7a44aa84b48",
- "class": "File",
- "checksum": "sha1$a0b65939670bc2c010f4d5d6a0b3e4e4590fb92b",
- "size": 13,
- "path": "/home/manimekalai/51fe79d15e7790a9ded795304220d7a44aa84b48"
- }
-}
-Final process status is success
diff --git a/doc/ccwl.skb b/doc/ccwl.skb
index 41b1642..c948b53 100644
--- a/doc/ccwl.skb
+++ b/doc/ccwl.skb
@@ -179,8 +179,8 @@ references the input ,(code "file").])
(scheme-source "doc/pass-stdin.scm")
(p [Compiling and running this workflow gives us the following
-output. Notice the file ,(file "foo") passed into the standard input
-of ,(command "wc"), and the file size reported in bytes.])
+output. Notice the file ,(file "hello.txt") passed into the standard
+input of ,(command "wc"), and the file size reported in bytes.])
(prog :line #f (source :file "doc/pass-stdin.out")))
diff --git a/doc/checksum.out b/doc/checksum.out
deleted file mode 100644
index 01d7155..0000000
--- a/doc/checksum.out
+++ /dev/null
@@ -1,49 +0,0 @@
-$ ccwl compile checksum.scm > checksum.cwl
-$ cwltool checksum.cwl --file hello.txt
-[workflow ] start
-[workflow ] starting step sha256sum
-[step sha256sum] start
-[job sha256sum] /tmp/rjbcjppq$ sha256sum \
- /tmp/pc2bbl6o/stg2f7cdda0-9d89-47b7-96b6-fa377cc61c49/hello.txt > /tmp/rjbcjppq/0d2eaa5619c14b43326101200d0f27b0d8a1a4b1
-[job sha256sum] completed success
-[step sha256sum] completed success
-[workflow ] starting step sha1sum
-[step sha1sum] start
-[job sha1sum] /tmp/1cjtot5q$ sha1sum \
- /tmp/wliybbsp/stg993b2838-c803-4527-89d6-6a0cd7a0587a/hello.txt > /tmp/1cjtot5q/d2f19c786fcd3feb329004c8747803fba581a02d
-[job sha1sum] completed success
-[step sha1sum] completed success
-[workflow ] starting step md5sum
-[step md5sum] start
-[job md5sum] /tmp/z7fe89c7$ md5sum \
- /tmp/41nnygw9/stgebdc428b-ec84-4283-88ae-682c7f4628ac/hello.txt > /tmp/z7fe89c7/112be1054505027982e64d56b0879049c12737c6
-[job md5sum] completed success
-[step md5sum] completed success
-[workflow ] completed success
-{
- "md5": {
- "location": "file:///home/manimekalai/112be1054505027982e64d56b0879049c12737c6",
- "basename": "112be1054505027982e64d56b0879049c12737c6",
- "class": "File",
- "checksum": "sha1$dd2e54f3bd22a8bb4ffbf543151050ee9645baf2",
- "size": 98,
- "path": "/home/manimekalai/112be1054505027982e64d56b0879049c12737c6"
- },
- "sha1": {
- "location": "file:///home/manimekalai/d2f19c786fcd3feb329004c8747803fba581a02d",
- "basename": "d2f19c786fcd3feb329004c8747803fba581a02d",
- "class": "File",
- "checksum": "sha1$f4112d33f41bc98a114b35759c26eec9a9f4256c",
- "size": 106,
- "path": "/home/manimekalai/d2f19c786fcd3feb329004c8747803fba581a02d"
- },
- "sha256": {
- "location": "file:///home/manimekalai/0d2eaa5619c14b43326101200d0f27b0d8a1a4b1",
- "basename": "0d2eaa5619c14b43326101200d0f27b0d8a1a4b1",
- "class": "File",
- "checksum": "sha1$868ce04a610122b1c1f2846e5e9f9fc7a289d120",
- "size": 130,
- "path": "/home/manimekalai/0d2eaa5619c14b43326101200d0f27b0d8a1a4b1"
- }
-}
-Final process status is success
diff --git a/doc/decompress-compile-run.out b/doc/decompress-compile-run.out
deleted file mode 100644
index 7ab832e..0000000
--- a/doc/decompress-compile-run.out
+++ /dev/null
@@ -1,36 +0,0 @@
-$ ccwl compile decompress-compile-run.scm > decompress-compile-run.cwl
-$ cwltool decompress-compile-run.cwl --compressed-source hello.c.gz
-[workflow ] start
-[workflow ] starting step decompress
-[step decompress] start
-[job decompress] /tmp/3bsk5yfm$ gzip \
- --stdout \
- --decompress \
- /tmp/yn4wh0j8/stg1e0bc56d-f845-4a28-a685-1faf96129eac/hello.c.gz > /tmp/3bsk5yfm/eae8fb860f3b6eaf6ae2b9d9285b5c07cc457e90
-[job decompress] completed success
-[step decompress] completed success
-[workflow ] starting step compile
-[step compile] start
-[job compile] /tmp/lnjz1vik$ gcc \
- -x \
- c \
- /tmp/rpf9g_lj/stg1be6bb98-7101-4f46-9885-fe0a985dee73/eae8fb860f3b6eaf6ae2b9d9285b5c07cc457e90
-[job compile] completed success
-[step compile] completed success
-[workflow ] starting step run
-[step run] start
-[job run] /tmp/fftn945x$ /tmp/favjw7d5/stg2576ae91-5240-4731-b98d-dee0f8ef7703/a.out > /tmp/fftn945x/c32c587f7afbdf87cf991c14a43edecf09cd93bf
-[job run] completed success
-[step run] completed success
-[workflow ] completed success
-{
- "stdout": {
- "location": "file:///home/manimekalai/c32c587f7afbdf87cf991c14a43edecf09cd93bf",
- "basename": "c32c587f7afbdf87cf991c14a43edecf09cd93bf",
- "class": "File",
- "checksum": "sha1$a0b65939670bc2c010f4d5d6a0b3e4e4590fb92b",
- "size": 13,
- "path": "/home/manimekalai/c32c587f7afbdf87cf991c14a43edecf09cd93bf"
- }
-}
-Final process status is success
diff --git a/doc/hello-world.out b/doc/hello-world.out
deleted file mode 100644
index 3a783a1..0000000
--- a/doc/hello-world.out
+++ /dev/null
@@ -1,13 +0,0 @@
-$ ccwl compile hello-world.scm > hello-world.cwl
-$ cwltool hello-world.cwl --message "Hello World!"
-[workflow ] start
-[workflow ] starting step echo
-[step echo] start
-[job echo] /tmp/zprgn3x0$ echo \
- 'Hello World!'
-Hello World!
-[job echo] completed success
-[step echo] completed success
-[workflow ] completed success
-{}
-Final process status is success \ No newline at end of file
diff --git a/doc/hello.c.gz b/doc/hello.c.gz
new file mode 100644
index 0000000..81c4d84
--- /dev/null
+++ b/doc/hello.c.gz
Binary files differ
diff --git a/doc/hello.tar b/doc/hello.tar
new file mode 100644
index 0000000..edcc4a8
--- /dev/null
+++ b/doc/hello.tar
Binary files differ
diff --git a/doc/hello.tar.out b/doc/hello.tar.out
deleted file mode 100644
index 2d492b7..0000000
--- a/doc/hello.tar.out
+++ /dev/null
@@ -1,2 +0,0 @@
-$ tar --list --file hello.tar
-hello.txt
diff --git a/doc/hello.txt b/doc/hello.txt
new file mode 100644
index 0000000..980a0d5
--- /dev/null
+++ b/doc/hello.txt
@@ -0,0 +1 @@
+Hello World!
diff --git a/doc/pass-stdin.out b/doc/pass-stdin.out
deleted file mode 100644
index c4af7da..0000000
--- a/doc/pass-stdin.out
+++ /dev/null
@@ -1,13 +0,0 @@
-$ ccwl compile pass-stdin.scm > pass-stdin.cwl
-$ cwltool pass-stdin.cwl --file foo
- [workflow ] start
- [workflow ] starting step count-bytes
- [step count-bytes] start
- [job count-bytes] /tmp/wxi6_9jz$ wc \
- -c < /tmp/siden6hu/stg51eaae41-52a5-4e69-a78e-caefd84f7af5/foo
-37
- [job count-bytes] completed success
- [step count-bytes] completed success
- [workflow ] completed success
-{}
- Final process status is success \ No newline at end of file