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authorArun Isaac2023-11-16 13:35:40 +0000
committerArun Isaac2023-11-16 13:59:33 +0000
commit900c76a29726778a34ba0cbeb832cddd618783f4 (patch)
tree817d51c15cd8d4c2ee88b6f9f018f16c20f47529 /doc
parent7d1cc9b535afeb6021bec83b3220928998361528 (diff)
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ccwl: Support nested arrays.
* ccwl/ccwl.scm (construct-type-syntax): Construct types recursively to support nested arrays. (key->output): Recursively convert stdout types to File types. * ccwl/cwl.scm (type->cwl): New function. (input->cwl-scm, output->cwl-scm): Use type->cwl. * tests/ccwl.scm (make-array-type): New function. (construct-type-syntax-wrapper): New syntax. ("construct-type-syntax on primitive types", "construct-type-syntax on array types", "construct-type-syntax on nested array types"): New tests. * tests/cwl.scm, doc/array-types.scm, doc/nested-array-types.scm: New files. * doc/ccwl.skb (Cookbook)[Array types]: New section.
Diffstat (limited to 'doc')
-rw-r--r--doc/array-types.scm2
-rw-r--r--doc/ccwl.skb5
-rw-r--r--doc/nested-array-types.scm2
3 files changed, 9 insertions, 0 deletions
diff --git a/doc/array-types.scm b/doc/array-types.scm
new file mode 100644
index 0000000..1722d7c
--- /dev/null
+++ b/doc/array-types.scm
@@ -0,0 +1,2 @@
+(workflow ((foo #:type (array string)))
+ […])
diff --git a/doc/ccwl.skb b/doc/ccwl.skb
index 2e84d58..1ae35f2 100644
--- a/doc/ccwl.skb
+++ b/doc/ccwl.skb
@@ -332,6 +332,11 @@ to ,(emph "stage") the input file into the output directory. We may
express this in ccwl using the ,(code "#:stage?") parameter to the
inputs to be staged. Here is a rather concocted example.]
(scheme-source "doc/staging-input-files.scm")))
+ (section :title [Array types]
+ (p [ccwl supports array types using the following syntax.]
+ (scheme-source "doc/array-types.scm"))
+ (p [Nested array types are also supported.]
+ (scheme-source "doc/nested-array-types.scm")))
(section :title [Scatter/gather]
(p [ccwl supports CWL's dotproduct scatter/gather feature using
the following syntax. Here, the ,(code [other-messages]) input to the
diff --git a/doc/nested-array-types.scm b/doc/nested-array-types.scm
new file mode 100644
index 0000000..7968750
--- /dev/null
+++ b/doc/nested-array-types.scm
@@ -0,0 +1,2 @@
+(workflow ((foo #:type (array (array string))))
+ […])