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authorArun Isaac2021-11-02 01:17:41 +0530
committerArun Isaac2021-11-02 01:31:56 +0530
commit0b359cf2c32cde81b4311d55273c8f6c14ca6b93 (patch)
tree50def438dc8033db14804f33a2aef7fcffa2d9ec /.gitignore
parent179925c5d88ae38bc28baf470d350461d49ebede (diff)
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ccwl: Support external CWL workflows.
* ccwl/ccwl.scm: Import (yaml). Export cwl-workflow?, cwl-workflow, cwl-workflow-file, cwl-workflow-inputs and cwl-workflow-outputs. (<cwl-workflow>): New type. (cwl-workflow, function-input-keys, function-outputs, function-object): New functions. (command-input-keys, command-object): Delete functions. (collect-steps): Replace command-object with function-object, command-input-keys with function-input-keys and command-outputs with function-outputs. * ccwl/cwl.scm (workflow->cwl-scm): Handle <cwl-workflow> objects. * tests/ccwl.scm ("read all forms of inputs and outputs from a CWL workflow"): New test. * guix.scm: Import (gnu packages guile-xyz) and (guix utils). (guile-libyaml): New variable. (ccwl)[inputs]: Add guile-libyaml.
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