From f1b4e9950120224e0631bb86309590dfb661f2b1 Mon Sep 17 00:00:00 2001
From: Pjotr Prins
Date: Mon, 13 Apr 2020 10:29:31 -0500
Subject: Format stack dump in output

---
 bh20simplewebuploader/main.py              | 7 +++++--
 bh20simplewebuploader/templates/error.html | 5 ++++-
 2 files changed, 9 insertions(+), 3 deletions(-)

(limited to 'bh20simplewebuploader')

diff --git a/bh20simplewebuploader/main.py b/bh20simplewebuploader/main.py
index 81f2ef9..693e4fd 100644
--- a/bh20simplewebuploader/main.py
+++ b/bh20simplewebuploader/main.py
@@ -3,6 +3,7 @@ import tempfile
 import shutil
 import subprocess
 import os
+import sys
 import re
 import string
 import yaml
@@ -250,12 +251,14 @@ def receive_files():
                     error_message="You did not include metadata."), 403)
 
         # Try and upload files to Arvados using the sequence uploader CLI
-        result = subprocess.run(['bh20-seq-uploader', fasta_dest, metadata_dest],
+
+        result = subprocess.run(['python3','bh20sequploader/main.py', fasta_dest, metadata_dest],
             stdout=subprocess.PIPE, stderr=subprocess.PIPE)
 
         if result.returncode != 0:
             # It didn't work. Complain.
-            error_message="Upload failed. Uploader returned {} and said:\n{}".format(result.returncode, result.stderr)
+            error_message="Uploader returned value {} and said:".format(result.returncode) + str(result.stderr.decode('utf-8'))
+            print(error_message, file=sys.stderr)
             return (render_template('error.html', error_message=error_message), 403)
         else:
             # It worked. Say so.
diff --git a/bh20simplewebuploader/templates/error.html b/bh20simplewebuploader/templates/error.html
index c2ab0a4..b1d9402 100644
--- a/bh20simplewebuploader/templates/error.html
+++ b/bh20simplewebuploader/templates/error.html
@@ -9,7 +9,10 @@
         <h1>Upload Failed</h1>
         <hr>
         <p>
-            Your upload has failed. {{error_message}}
+          Your upload has failed.
+          <pre>
+            {{error_message|safe}}
+          </pre>
         </p>
         <p>
             <a href="/">Click here to try again.</a>
-- 
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