;;; ravanan --- High-reproducibility CWL runner powered by Guix ;;; Copyright © 2025 Arun Isaac ;;; ;;; This file is part of ravanan. ;;; ;;; ravanan is free software: you can redistribute it and/or modify it ;;; under the terms of the GNU General Public License as published by ;;; the Free Software Foundation, either version 3 of the License, or ;;; (at your option) any later version. ;;; ;;; ravanan is distributed in the hope that it will be useful, but ;;; WITHOUT ANY WARRANTY; without even the implied warranty of ;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU ;;; General Public License for more details. ;;; ;;; You should have received a copy of the GNU General Public License ;;; along with ravanan. If not, see . (define-module (e2e-tests) #:use-module ((cwl-conformance) #:select (cwltest-suite-gexp)) #:use-module ((gnu packages bioinformatics) #:select (ccwl)) #:use-module (guix gexp) #:use-module (ice-9 match)) (define (e2e-tools-gexp sources-directory) (with-imported-modules '((guix build utils)) #~(begin (use-modules (rnrs io ports) (srfi srfi-26) (ice-9 match) (ice-9 popen) (guix build utils)) (define (call-with-input-pipe command proc) (match command ((prog args ...) (let ((port #f)) (dynamic-wind (lambda () (set! port (apply open-pipe* OPEN_READ prog args))) (cut proc port) (lambda () (unless (zero? (close-pipe port)) (error "Command invocation failed" command)))))))) (mkdir #$output) (for-each (lambda (source-file) (call-with-output-file (string-append #$output "/" (basename source-file ".scm") ".cwl") (cut display (call-with-input-pipe (list #$(file-append ccwl "/bin/ccwl") "compile" source-file) get-string-all) <>))) (find-files #$sources-directory "\\.scm$"))))) (define e2e-tools (computed-file "e2e-tools" (e2e-tools-gexp (local-file "../e2e-tests/tools" #:recursive? #t)))) (define e2e-test-suite (file-union "e2e-test-suite" `(("tests.yaml" ,(local-file "../e2e-tests/tests.yaml")) ("tools" ,e2e-tools) ("jobs" ,(local-file "../e2e-tests/jobs" #:recursive? #t))))) (define-public e2e-tests (program-file "e2e-tests" (cwltest-suite-gexp (file-append e2e-test-suite "/tests.yaml") (local-file "../e2e-tests/manifest.scm")))) e2e-tests