### pyhegp --- Homomorphic encryption of genotypes and phenotypes ### Copyright © 2025 Arun Isaac ### ### This file is part of pyhegp. ### ### pyhegp is free software: you can redistribute it and/or modify it ### under the terms of the GNU General Public License as published by ### the Free Software Foundation, either version 3 of the License, or ### (at your option) any later version. ### ### pyhegp is distributed in the hope that it will be useful, but ### WITHOUT ANY WARRANTY; without even the implied warranty of ### MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU ### General Public License for more details. ### ### You should have received a copy of the GNU General Public License ### along with pyhegp. If not, see . import tempfile from hypothesis import given, strategies as st from hypothesis.extra.numpy import arrays, array_shapes import pandas as pd from pytest import approx from pyhegp.serialization import read_summary, write_summary, read_summary_headers, read_genotype, write_genotype, read_phenotype, write_phenotype, read_key, write_key from helpers.strategies import * @given(summaries()) def test_read_write_summary_are_inverses(summary): with tempfile.TemporaryFile() as file: write_summary(file, summary) file.seek(0) recovered_summary = read_summary(file) pd.testing.assert_frame_equal(summary.data, recovered_summary.data) assert summary.n == recovered_summary.n @st.composite def properties_and_whitespace(draw): n = draw(st.integers(min_value=0, max_value=10)) return (draw(st.dictionaries(st.text(st.characters(codec="ascii", exclude_categories=("Cc", "Zs")), min_size=1) .filter(lambda key: not key.startswith("#")), st.text(st.characters(codec="ascii", exclude_categories=("Cc",)), min_size=1), min_size=n, max_size=n)), draw(st.integers(min_value=0, max_value=10)), draw(st.lists(st.integers(min_value=0, max_value=10), min_size=n, max_size=n))) @given(properties_and_whitespace()) def test_read_summary_headers_variable_whitespace(properties_and_whitespace): properties, header_whitespace, key_value_whitespace = properties_and_whitespace with tempfile.TemporaryFile() as file: file.write(b"#") file.write(b" " * header_whitespace) file.write(b"pyhegp summary file version 1\n") for (key, value), key_value_whitespace in zip(properties.items(), key_value_whitespace): file.write(b"#") file.write(b" " * key_value_whitespace) file.write(f"{key} {value}\n".encode("ascii")) file.seek(0) assert properties == read_summary_headers(file) @given(genotype_frames()) def test_read_write_genotype_are_inverses(genotype): with tempfile.TemporaryFile() as file: write_genotype(file, genotype) file.seek(0) pd.testing.assert_frame_equal(genotype, read_genotype(file)) @given(phenotype_frames()) def test_read_write_phenotype_are_inverses(phenotype): with tempfile.TemporaryFile() as file: write_phenotype(file, phenotype) file.seek(0) pd.testing.assert_frame_equal(phenotype, read_phenotype(file)) @given(arrays("float64", array_shapes(min_dims=2, max_dims=2))) def test_read_write_key_are_inverses(key): with tempfile.TemporaryFile() as file: write_key(file, key) file.seek(0) assert key == approx(read_key(file), nan_ok=True)