### pyhegp --- Homomorphic encryption of genotypes and phenotypes ### Copyright © 2025 Arun Isaac ### ### This file is part of pyhegp. ### ### pyhegp is free software: you can redistribute it and/or modify it ### under the terms of the GNU General Public License as published by ### the Free Software Foundation, either version 3 of the License, or ### (at your option) any later version. ### ### pyhegp is distributed in the hope that it will be useful, but ### WITHOUT ANY WARRANTY; without even the implied warranty of ### MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU ### General Public License for more details. ### ### You should have received a copy of the GNU General Public License ### along with pyhegp. If not, see . import tempfile from hypothesis import given, strategies as st from hypothesis.extra.numpy import arrays, array_shapes from pytest import approx from pyhegp.serialization import Summary, read_summary, write_summary, read_summary_headers @given(st.integers(), arrays("float64", st.shared(array_shapes(max_dims=1), key="number-of-snps"), elements=st.floats()), arrays("float64", st.shared(array_shapes(max_dims=1), key="number-of-snps"), elements=st.floats())) def test_read_write_summary_are_inverses(n, mean, std): with tempfile.TemporaryFile() as file: write_summary(file, Summary(n, mean, std)) file.seek(0) summary = read_summary(file) assert ((summary.n == n) and (summary.mean == approx(mean, nan_ok=True)) and (summary.std == approx(std, nan_ok=True))) @st.composite def properties_and_whitespace(draw): n = draw(st.integers(min_value=0, max_value=10)) return (draw(st.dictionaries(st.text(st.characters(codec="ascii", exclude_categories=("Cc", "Zs")), min_size=1) .filter(lambda key: not key.startswith("#")), st.text(st.characters(codec="ascii", exclude_categories=("Cc",)), min_size=1), min_size=n, max_size=n)), draw(st.integers(min_value=0, max_value=10)), draw(st.lists(st.integers(min_value=0, max_value=10), min_size=n, max_size=n))) @given(properties_and_whitespace()) def test_read_summary_headers_variable_whitespace(properties_and_whitespace): properties, header_whitespace, key_value_whitespace = properties_and_whitespace with tempfile.TemporaryFile() as file: file.write(b"#") file.write(b" " * header_whitespace) file.write(b"pyhegp summary file version 1\n") for (key, value), key_value_whitespace in zip(properties.items(), key_value_whitespace): file.write(b"#") file.write(b" " * key_value_whitespace) file.write(f"{key} {value}\n".encode("ascii")) file.seek(0) assert properties == read_summary_headers(file)