From 92727365d1e3fc67b66278fd7cbcda77dd27c09e Mon Sep 17 00:00:00 2001
From: Arun Isaac
Date: Mon, 4 Aug 2025 12:40:31 +0100
Subject: Add simple workflow.

* README.md (How to use): Indent down into "Joint/federated analysis
with many data owners" section.
[Simple data sharing]: New section.
* doc/generate-images.sh: Add simple workflow.
* doc/workflow.png: Rename to doc/joint-workflow.png.
* doc/workflow.uml: Rename to doc/joint-workflow.uml.
* doc/simple-workflow.png, doc/simple-workflow.uml: New files.
* tests/test_pyhegp.py: Import pytest.
(test_simple_workflow): New test.
* test-data/genotype.tsv: New file.
---
 README.md | 13 ++++++++++++-
 1 file changed, 12 insertions(+), 1 deletion(-)

(limited to 'README.md')

diff --git a/README.md b/README.md
index 4378456..9fdc466 100644
--- a/README.md
+++ b/README.md
@@ -19,8 +19,19 @@ pip install git+https://github.com/encryption4genetics/pyhegp
 ```
 
 # How to use
+## Simple data sharing
 
-![Workflow](doc/workflow.png)
+![Simple data sharing workflow](doc/simple-workflow.png)
+
+In this simple scenario, there is only one data owner and they wish to share their encrypted data with a researcher. The data owner encrypts their data with:
+```
+pyhegp encrypt -o encrypted-genotype.tsv genotype.tsv
+```
+They then send the encrypted data to the researcher. Note that data sharing is carried out-of-band and is outside the scope of `pyhegp`.
+
+## Joint/federated analysis with many data owners
+
+![Joint/federated analysis workflow](doc/joint-workflow.png)
 
 Data owners generate summary statistics for their data.
 ```
-- 
cgit 1.4.1