diff options
Diffstat (limited to '.guix/hsmice-test.scm')
| -rw-r--r-- | .guix/hsmice-test.scm | 12 |
1 files changed, 11 insertions, 1 deletions
diff --git a/.guix/hsmice-test.scm b/.guix/hsmice-test.scm index bb84a09..8e50160 100644 --- a/.guix/hsmice-test.scm +++ b/.guix/hsmice-test.scm @@ -18,7 +18,8 @@ (define-module (hsmice-test) #:use-module ((gn packages bioinformatics) #:select (r-genio)) - #:use-module ((gn packages julia) #:select (julia-jwas julia-pipe)) + #:use-module ((gn packages julia) #:select (julia-pipe)) + #:use-module ((gn packages julia) #:select (julia-jwas) #:prefix guix:) #:use-module ((gnu packages base) #:select (tar)) #:use-module ((gnu packages compression) #:select (gzip)) #:use-module ((gnu packages cran) #:select (r-dplyr r-purrr r-qqman r-stringr)) @@ -198,6 +199,15 @@ genome-wide association study} library for R.") (define hsmice-qtl-checked (computed-file "hsmice-qtl-checked" hsmice-qtl-checked-gexp)) +;; Our CI system does not have enough memory to run tests for +;; julia-jwas. So, we disable them. +(define julia-jwas + (package + (inherit guix:julia-jwas) + (arguments + (substitute-keyword-arguments (package-arguments guix:julia-jwas) + ((#:tests? tests? #f) #f))))) + (define hsmice-jwas-gwas-gexp (let ((gwas-script (local-file "../e2e-tests/hsmice/jwas-gwas.jl")) (jwas-manhattan-script (local-file "../e2e-tests/hsmice/jwas-manhattan.r")) |