domagi manual 2026Arun Isaac Database Schema domagi uses a SQL schema with the following four tables to represent a pangenome. segment entity representing pangenome segments link many-to-many relation between segments representing pangenome links path entity representing pangenome paths path_segment many-to-many relation mapping paths to segments associating them with the path at a certain coordinate The schema and the entity relationship diagram are visualized in and respectively.
domagi database schema
domagi entity relationship diagram in Chen's notation
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