Extract subgraphs or parts of a graph defined by query criteria. -n SEGMENT --node=SEGMENT Segment name from which to begin the traversal -c STEPS --context-steps=STEPS The number of segments away from the initial segments to traverse -r PATH_RANGE --path-range=PATH_RANGE Extract segments in PATH_RANGE, specified in the path[:pos1[-pos2]] format. pos1 and pos2 are 0-based coordinates. The extracted segments include pos1 (inclusive) but not pos2 (exclusive). -d DISTANCE --max-distance-subpaths=DISTANCE Bridge subpaths that are separated by less than DISTANCE. Default DISTANCE is 300000. This reduces the fragmentation of paths that are unspecified in the input path ranges. Set DISTANCE to 0 to disable bridging. In contrast to odgi, when bridging subpaths, domagi does not use the newly extracted segments to extend the subgraph further and recursively bridge more subpaths.