From c11d1286141f368e7e12601234d40ab63b0b9ab8 Mon Sep 17 00:00:00 2001
From: Arun Isaac
Date: Fri, 14 Aug 2026 14:41:22 +0100
Subject: Test paths --fasta.

---
 tests/test_domagi.py | 22 ++++++++++++++++++++++
 1 file changed, 22 insertions(+)

(limited to 'tests')

diff --git a/tests/test_domagi.py b/tests/test_domagi.py
index 73897cf..4af8c37 100644
--- a/tests/test_domagi.py
+++ b/tests/test_domagi.py
@@ -207,6 +207,28 @@ def test_domagi_paths(tmp_path, test_data_file, expected_output):
                                    header=None),
                        check_dtype=False)
 
+@pytest.mark.xfail
+@pytest.mark.parametrize("test_data_file, expected_output",
+                         [(Path("test-data/test1.gfa"),
+                           Path("test-data/expected-output/test1.fa")),
+                          (Path("test-data/test2.gfa"),
+                           Path("test-data/expected-output/test2.fa")),
+                          (Path("test-data/test3.gfa"),
+                           Path("test-data/expected-output/test3.fa"))])
+def test_domagi_paths_fasta(tmp_path, test_data_file, expected_output):
+    duckdb_path = tmp_path / f"{test_data_file.stem}.db"
+    runner = CliRunner()
+    result = runner.invoke(main, ["build",
+                                  "--gfa", test_data_file,
+                                  "--out", duckdb_path])
+    assert result.exit_code == 0
+    result = runner.invoke(main, ["paths",
+                                  "--fasta",
+                                  "--db", duckdb_path])
+    assert result.exit_code == 0
+    with open(expected_output) as file:
+        assert result.stdout == file.read()
+
 @pytest.mark.parametrize("test_data_file, expected_output",
                          [(Path("test-data/test1.gfa"),
                            Path("test-data/expected-output/test1-stats")),
-- 
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