From d2282f6b7453a023af92424309e8713f5c8f7ca7 Mon Sep 17 00:00:00 2001
From: Arun Isaac
Date: Tue, 18 Aug 2026 14:44:46 +0100
Subject: Add chop subcommand.

---
 doc/domagi-chop.dbk | 22 ++++++++++++++++++++++
 doc/domagi.dbk      |  1 +
 2 files changed, 23 insertions(+)
 create mode 100644 doc/domagi-chop.dbk

(limited to 'doc')

diff --git a/doc/domagi-chop.dbk b/doc/domagi-chop.dbk
new file mode 100644
index 0000000..dc308e1
--- /dev/null
+++ b/doc/domagi-chop.dbk
@@ -0,0 +1,22 @@
+<?xml version="1.0" encoding="utf-8"?>
+<refentry xmlns="http://docbook.org/ns/docbook"
+          xmlns:xi="http://www.w3.org/2001/XInclude"
+          xmlns:xlink="http://www.w3.org/1999/xlink">
+  <xi:include href="gen-refentry-chop.xml" />
+  <refsection>
+    <title>Description</title>
+    <para>Divide segments into smaller pieces while preserving the graph topology.</para>
+    <variablelist>
+      <title>Options</title>
+      <xi:include href="input-db-argument.dbk" />
+      <xi:include href="output-db-argument.dbk" />
+      <varlistentry>
+        <term><option>-c <replaceable>N</replaceable></option></term>
+        <term><option>--chop-to=<replaceable>N</replaceable></option></term>
+        <listitem><para>Divide nodes that are longer than <replaceable>N</replaceable> base pairs into nodes no longer than <replaceable>N</replaceable> while preserving the graph topology.</para></listitem>
+      </varlistentry>
+      <xi:include href="threads-argument.dbk" />
+      <xi:include href="help-option.dbk" />
+    </variablelist>
+  </refsection>
+</refentry>
diff --git a/doc/domagi.dbk b/doc/domagi.dbk
index 53f25e2..0888ac1 100644
--- a/doc/domagi.dbk
+++ b/doc/domagi.dbk
@@ -8,6 +8,7 @@
 <reference>
   <title>Reference</title>
   <xi:include href="domagi-build.dbk" />
+  <xi:include href="domagi-chop.dbk" />
   <xi:include href="domagi-crush.dbk" />
   <xi:include href="domagi-depth.dbk" />
   <xi:include href="domagi-extract.dbk" />
-- 
cgit 1.4.1