From 439ada732261b76816dddc236ee41cca651a0c14 Mon Sep 17 00:00:00 2001
From: Arun Isaac
Date: Thu, 13 Aug 2026 22:13:01 +0100
Subject: Add manual.

---
 doc/domagi-crush.dbk | 17 +++++++++++++++++
 1 file changed, 17 insertions(+)
 create mode 100644 doc/domagi-crush.dbk

(limited to 'doc/domagi-crush.dbk')

diff --git a/doc/domagi-crush.dbk b/doc/domagi-crush.dbk
new file mode 100644
index 0000000..db958bb
--- /dev/null
+++ b/doc/domagi-crush.dbk
@@ -0,0 +1,17 @@
+<?xml version="1.0" encoding="utf-8"?>
+<refentry xmlns="http://docbook.org/ns/docbook"
+          xmlns:xi="http://www.w3.org/2001/XInclude"
+          xmlns:xlink="http://www.w3.org/1999/xlink">
+  <xi:include href="gen-refentry-crush.xml" />
+  <refsection>
+    <title>Description</title>
+    <para>Replace runs of Ns with single <literal>N</literal>s (for example, <literal>ANNNT</literal> becomes <literal>ANT</literal>). Similar to <link xlink:href="https://www.ncbi.nlm.nih.gov/genbank/fastaformat/">the FASTA format</link>, the symbol <literal>N</literal> is used to represent ambiguous or unknown nucleotides.</para>
+    <variablelist>
+      <title>Options</title>
+      <xi:include href="input-db-argument.dbk" />
+      <xi:include href="output-db-argument.dbk" />
+      <xi:include href="threads-argument.dbk" />
+      <xi:include href="help-option.dbk" />
+    </variablelist>
+  </refsection>
+</refentry>
-- 
cgit 1.4.1