From ff40d448e277aff062b7b2cf7b61548dc898cf87 Mon Sep 17 00:00:00 2001
From: Arun Isaac
Date: Thu, 27 Aug 2026 01:11:28 +0100
Subject: Move extract --context-steps option close to --node.

---
 domagi/domagi.py | 8 ++++----
 1 file changed, 4 insertions(+), 4 deletions(-)

diff --git a/domagi/domagi.py b/domagi/domagi.py
index 0abf006..eda2981 100644
--- a/domagi/domagi.py
+++ b/domagi/domagi.py
@@ -225,14 +225,14 @@ def depth(con, graph_depth_table, paths, bed_input, threads, progress):
 @click.option("-n", "--node", "segment_name",
               type=click.STRING,
               help="segment name from which to begin the traversal")
-@click.option("-r", "--path-range", "path_range",
-              type=click.STRING,
-              metavar="PATH[:POS1[-POS2]]",
-              help="extract segments in path range")
 @click.option("-c", "--context-steps", "steps",
               type=click.INT,
               # TODO: Add default=0
               help="number of traversal steps")
+@click.option("-r", "--path-range", "path_range",
+              type=click.STRING,
+              metavar="PATH[:POS1[-POS2]]",
+              help="extract segments in path range")
 @common_options
 def extract(con, outfile, segment_name, path_range, steps, threads, progress):
     set_duckdb_threads(con, threads)
-- 
cgit 1.4.1