From 4bea0b85e1992a01dd36d32c8b2c68a497c6d001 Mon Sep 17 00:00:00 2001
From: Arun Isaac
Date: Fri, 5 Nov 2021 12:10:06 +0530
Subject: doc: Document reuse of external CWL workflows.

* doc/ccwl.skb (Cookbook): New chapter.
* doc/external-cwl-workflow.scm, doc/echo.cwl: New files.
* .gitignore: Add !doc/echo.cwl.
---
 doc/ccwl.skb                  | 16 ++++++++++++++++
 doc/echo.cwl                  | 12 ++++++++++++
 doc/external-cwl-workflow.scm | 12 ++++++++++++
 3 files changed, 40 insertions(+)
 create mode 100644 doc/echo.cwl
 create mode 100644 doc/external-cwl-workflow.scm

(limited to 'doc')

diff --git a/doc/ccwl.skb b/doc/ccwl.skb
index 57fa225..c460ab4 100644
--- a/doc/ccwl.skb
+++ b/doc/ccwl.skb
@@ -249,6 +249,22 @@ following output.])
 ,(file "d2f19c786fcd3feb329004c8747803fba581a02d") and
 ,(file "0d2eaa5619c14b43326101200d0f27b0d8a1a4b1") respectively.]))))
 
+  (chapter :title [Cookbook]
+    (section :title [Reuse external CWL workflows]
+      (p [Even though you may be a ccwl convert (hurrah!), others may
+not be. And, you might have to work with CWL workflows written by
+others. ccwl permits easy reuse of external CWL workflows, and free
+mixing with ccwl commands. Here is a workflow to find the string
+length of a message, where one of the commands, ,(code "echo"), is
+defined as an external CWL workflow. External CWL workflows are
+referenced in ccwl using ,(code "cwl-workflow"). The identifiers and
+types of the inputs/outputs are read from the YAML specification of
+the external CWL workflow.]
+         (scheme-source "doc/external-cwl-workflow.scm")
+         [,(file "echo.cwl") is defined as]
+         ;; TODO: Syntax highlight doc/external-cwl-workflow.cwl.
+         (prog :line #f (source :file "doc/echo.cwl")))))
+
   (chapter :title [Contributing]
     (p [ccwl is developed on GitHub at ,(ref
 :url "https://github.com/arunisaac/ccwl"). Feedback, suggestions,
diff --git a/doc/echo.cwl b/doc/echo.cwl
new file mode 100644
index 0000000..6ecd530
--- /dev/null
+++ b/doc/echo.cwl
@@ -0,0 +1,12 @@
+cwlVersion: v1.2
+class: CommandLineTool
+baseCommand: echo
+arguments: ["-n"]
+inputs:
+  message:
+    type: string
+    inputBinding:
+      position: 1
+outputs:
+  output:
+    type: stdout
diff --git a/doc/external-cwl-workflow.scm b/doc/external-cwl-workflow.scm
new file mode 100644
index 0000000..36c3172
--- /dev/null
+++ b/doc/external-cwl-workflow.scm
@@ -0,0 +1,12 @@
+(define echo
+  (cwl-workflow "echo.cwl"))
+
+(define string-length
+  (command #:inputs file
+           #:run "wc" "--chars"
+           #:outputs (length #:type stdout)
+           #:stdin file))
+
+(workflow ((message #:type string))
+  (pipe (echo #:message message)
+        (string-length #:file output)))
-- 
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