From 99b11c99393e2d5e52347c456c4370f842c0fb49 Mon Sep 17 00:00:00 2001
From: Arun Isaac
Date: Tue, 17 Aug 2021 15:25:09 +0530
Subject: build-aux: Preserve only the LIBRARY_PATH environment in cwltool
 runs.

* build-aux/generate-cwl-output.sh.in: Preserve only the LIBRARY_PATH
environment variable.
---
 build-aux/generate-cwl-output.sh.in | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

(limited to 'build-aux')

diff --git a/build-aux/generate-cwl-output.sh.in b/build-aux/generate-cwl-output.sh.in
index 6f56996..ca5803e 100755
--- a/build-aux/generate-cwl-output.sh.in
+++ b/build-aux/generate-cwl-output.sh.in
@@ -28,9 +28,9 @@ output_file=$(basename $cwl_file .cwl).out
 {
     echo "\$ ccwl compile $(basename $cwl_file .cwl).scm > $cwl_file"
     echo "\$ cwltool $cwl_file $@"
-    # On Guix, workflows involving gcc need the
-    # --preserve-entire-environment flag.
-    @CWLTOOL@ --preserve-entire-environment --outdir cwl-output $cwl_file "$@" 2>&1 \
+    # On Guix, workflows involving gcc need to preserve the
+    # LIBRARY_PATH environment variable.
+    @CWLTOOL@ --preserve-environment LIBRARY_PATH --outdir cwl-output $cwl_file "$@" 2>&1 \
         | @SED@ '1,2d' \
         | @SED@ 's|\[1;30mINFO\[0m ||g' \
         | @SED@ "s|$(pwd)|/home/manimekalai|g"
-- 
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