cwlVersion: v1.1 class: CommandLineTool hints: ResourceRequirement: coresMin: 1 ramMin: 3000 inputs: reversed_sorting: type: string inputBinding: {position: 3} readsFA: type: File inputBinding: {position: 2} script: type: File inputBinding: {position: 1} default: {class: File, location: sort_fasta_by_quality_and_len.py} stdout: $(inputs.readsFA.nameroot).sorted_by_quality_and_len.fasta outputs: sortedReadsFA: type: stdout dups: type: File outputBinding: {glob: dups.txt} requirements: InlineJavascriptRequirement: {} ShellCommandRequirement: {} baseCommand: [python]