import os
import json

def readitems(stem):
    items = []
    b = 1
    while os.path.exists("%s%i" % (stem, b)):
        with open("%s%i" % (stem, b)) as f:
            items.extend(json.load(f))
        b += 1
    return items

reads = readitems("block")
subjects = readitems("subs")

relabeled_fasta = open("relabeledSeqs.fasta", "wt")
original_labels = open("originalLabels.ttl", "wt")

for i, r in enumerate(reads):
    with open(r["path"], "rt") as fa:
        label = fa.readline()
        original_labels.write("<%s> <http://biohackathon.org/bh20-seq-schema/original_fasta_label> \"%s\" .\n" % (subjects[i], label[1:].strip().replace('"', '\\"')))
        relabeled_fasta.write(">"+subjects[i]+"\n")
        data = fa.read(8096)
        while data:
            relabeled_fasta.write(data)
            endswithnewline = data.endswith("\n")
            data = fa.read(8096)
        if not endswithnewline:
            relabeled_fasta.write("\n")