cwlVersion: v1.1 class: CommandLineTool inputs: inputGFA: File outputs: odgiGraph: type: File outputBinding: glob: $(inputs.inputGFA.nameroot).unchop.sorted.odgi requirements: InlineJavascriptRequirement: {} ShellCommandRequirement: {} hints: DockerRequirement: dockerPull: "quay.io/biocontainers/odgi:v0.3--py37h8b12597_0" ResourceRequirement: coresMin: 4 ramMin: $(7 * 1024) outdirMin: $(Math.ceil((inputs.inputGFA.size/(1024*1024*1024)+1) * 2)) InitialWorkDirRequirement: listing: - entry: $(inputs.inputGFA) writable: true arguments: [odgi, build, -g, $(inputs.inputGFA), -o, -, {shellQuote: false, valueFrom: "|"}, odgi, unchop, -i, -, -o, -, {shellQuote: false, valueFrom: "|"}, odgi, sort, -i, -, -p, s, -o, $(inputs.inputGFA.nameroot).unchop.sorted.odgi ]