cwlVersion: v1.1 class: CommandLineTool inputs: readsFA: File outputs: readsPAF: stdout requirements: InlineJavascriptRequirement: {} hints: DockerRequirement: dockerPull: "quay.io/biocontainers/minimap2:2.17--h8b12597_1" ResourceRequirement: coresMin: 8 coresMax: 32 ramMin: $(9 * 1024) outdirMin: $(Math.ceil(inputs.readsFA.size/(1024*1024*1024) + 20)) stdout: $(inputs.readsFA.nameroot).paf baseCommand: minimap2 arguments: [-cx, asm20, -w, "1", -t, $(runtime.cores), $(inputs.readsFA), $(inputs.readsFA)]