"MT642388.1" . _:N1439b1d6d2d94e87933fa8e291ef424c "Pelle,B." . _:N1439b1d6d2d94e87933fa8e291ef424c "Sibley,T.R." . _:N1439b1d6d2d94e87933fa8e291ef424c "Gautom,R." . _:N4a8cabe36a4a4b889237bf50672afdc5 "SARS-CoV-2/human/USA/WA-S1134/2020" . _:N1439b1d6d2d94e87933fa8e291ef424c "Hiatt,B." . _:N95c93ea1ad6e466a923c5224615af9cd . _:N1439b1d6d2d94e87933fa8e291ef424c "Thompson,M." . _:N1439b1d6d2d94e87933fa8e291ef424c . _:N1439b1d6d2d94e87933fa8e291ef424c "Starita,L.M." . _:N1439b1d6d2d94e87933fa8e291ef424c "Brandstetter,E." . _:N1439b1d6d2d94e87933fa8e291ef424c "Englund,J.A." . _:N1439b1d6d2d94e87933fa8e291ef424c "Han,P.D." . _:N1439b1d6d2d94e87933fa8e291ef424c "Frazar,C.D." . _:N1439b1d6d2d94e87933fa8e291ef424c "Shendure,J." . _:N10d858ad0a8f428b99e9d50e44534232 . _:N1439b1d6d2d94e87933fa8e291ef424c "Adler,A." . _:N95c93ea1ad6e466a923c5224615af9cd "2020-05-04" . _:N1439b1d6d2d94e87933fa8e291ef424c "Bedford,T." . _:N95c93ea1ad6e466a923c5224615af9cd . _:N1439b1d6d2d94e87933fa8e291ef424c "Boeckh,M." . _:N1439b1d6d2d94e87933fa8e291ef424c "Fay,K." . _:N95c93ea1ad6e466a923c5224615af9cd . _:N1439b1d6d2d94e87933fa8e291ef424c "Lee,J." . _:N1439b1d6d2d94e87933fa8e291ef424c "Seattle Flu Study, 1959 NE Pacific Street, Seattle, WA 98195, USA" . _:N10d858ad0a8f428b99e9d50e44534232 . _:N1439b1d6d2d94e87933fa8e291ef424c "Ilcisin,M." . _:Naf3e36eba6f649e598a4cdae5798c5f9 . _:N1439b1d6d2d94e87933fa8e291ef424c "Richardson,M." . _:N1439b1d6d2d94e87933fa8e291ef424c "Truong,M." . _:N1439b1d6d2d94e87933fa8e291ef424c "Lutz,B.R." . _:N1439b1d6d2d94e87933fa8e291ef424c "Wolf,C.R." . _:N1439b1d6d2d94e87933fa8e291ef424c "Rieder,M.J." . _:N1439b1d6d2d94e87933fa8e291ef424c "Nickerson,D.A." . _:N95c93ea1ad6e466a923c5224615af9cd "MT642388.1" . _:N1439b1d6d2d94e87933fa8e291ef424c "Chu,H.Y." . _:N1439b1d6d2d94e87933fa8e291ef424c "Famulare,M." . _:N1439b1d6d2d94e87933fa8e291ef424c "Lindquist,S." . _:N1439b1d6d2d94e87933fa8e291ef424c "Melly,G." . _:N1439b1d6d2d94e87933fa8e291ef424c "Dykema,P." . _:N95c93ea1ad6e466a923c5224615af9cd . _:N4a8cabe36a4a4b889237bf50672afdc5 . _:N1439b1d6d2d94e87933fa8e291ef424c "University of Washington Medical Center" . _:N10d858ad0a8f428b99e9d50e44534232 "https://github.com/seattleflu/assembly v. June-2020" . _:N1439b1d6d2d94e87933fa8e291ef424c "Lacombe,K." . _:N4a8cabe36a4a4b889237bf50672afdc5 . _:Naf3e36eba6f649e598a4cdae5798c5f9 . "MT482110.1" . _:Nc4ef01f9f2db4f38a8684cb25da245b4 "Fink,L." . _:Nad39d44e054e467c8193bd138e266f8f . _:Nad39d44e054e467c8193bd138e266f8f . _:Ne8e1bc331b124c99a63cfec3382c304a . _:Nc4ef01f9f2db4f38a8684cb25da245b4 "Department of General Services" . _:Nc4ef01f9f2db4f38a8684cb25da245b4 "Division of Consolidated Laboratory Services, 600 N 5th Street, Richmond, VA 23219, USA" . _:Nc093e709d69e4d4ca70c21994f4daa07 "The 'collection_date' is estimated (the original date was: 2020-04)" . _:Nc093e709d69e4d4ca70c21994f4daa07 "2020-04-15" . _:N236dabd521664cf7982c44322e2b62a5 . _:N236dabd521664cf7982c44322e2b62a5 "SARS-CoV-2/human/USA/VA-DCLS-0118/2020" . _:Ne8e1bc331b124c99a63cfec3382c304a "minimap2 v. 2.17; ivar v. 1.1" . _:Ne8e1bc331b124c99a63cfec3382c304a . _:Nc093e709d69e4d4ca70c21994f4daa07 "MT482110.1" . _:Nc093e709d69e4d4ca70c21994f4daa07 . _:Nc093e709d69e4d4ca70c21994f4daa07 . _:Nc093e709d69e4d4ca70c21994f4daa07 . _:N236dabd521664cf7982c44322e2b62a5 . _:Nc4ef01f9f2db4f38a8684cb25da245b4 . "MT560682.1" . _:Nfe5c37a7d3764e15a7beb930264a45f4 . _:N2fb31f9e6f9b430aabb169df8ef1ff0e "Pandya,L." . _:N2fb31f9e6f9b430aabb169df8ef1ff0e "Mishra,U." . _:N2fb31f9e6f9b430aabb169df8ef1ff0e "Pandit,R." . _:Nfe5c37a7d3764e15a7beb930264a45f4 "SARS-CoV-2/human/IND/GBRC141b/2020" . _:N2fb31f9e6f9b430aabb169df8ef1ff0e "Modi,B." . _:N5812ea42f76e46a3b2d5c9133a932584 "CLC Genomics Workbench v. 12" . _:N2fb31f9e6f9b430aabb169df8ef1ff0e "Shrimali,G." . _:N5812ea42f76e46a3b2d5c9133a932584 . _:N2fb31f9e6f9b430aabb169df8ef1ff0e "Shah,P." . _:N2fb31f9e6f9b430aabb169df8ef1ff0e "Upadhyay,K.J." . _:N2fb31f9e6f9b430aabb169df8ef1ff0e "Patel,K." . _:Nfe5c37a7d3764e15a7beb930264a45f4 . _:N2fb31f9e6f9b430aabb169df8ef1ff0e "Saiyed,Z." . _:N2fb31f9e6f9b430aabb169df8ef1ff0e "Gandhi,M." . _:N2fb31f9e6f9b430aabb169df8ef1ff0e "Joshi,C." . _:N2466956e91c54b7680c573c4d08c3b03 . _:N2fb31f9e6f9b430aabb169df8ef1ff0e "Savaliya,N." . _:N2466956e91c54b7680c573c4d08c3b03 . _:N2fb31f9e6f9b430aabb169df8ef1ff0e "Kumar,R." . _:N34020c72a9b14ee4b55805531b479208 "MT560682.1" . _:N2fb31f9e6f9b430aabb169df8ef1ff0e "Patel,Z." . _:N2fb31f9e6f9b430aabb169df8ef1ff0e "Kumar,D." . _:N2fb31f9e6f9b430aabb169df8ef1ff0e "Vaghela,D." . _:N2fb31f9e6f9b430aabb169df8ef1ff0e "Dixit,R.D." . _:N2fb31f9e6f9b430aabb169df8ef1ff0e "Patel,F." . _:N2fb31f9e6f9b430aabb169df8ef1ff0e "Shah,T." . _:N2fb31f9e6f9b430aabb169df8ef1ff0e "Trivedi,P." . _:N2fb31f9e6f9b430aabb169df8ef1ff0e . _:N34020c72a9b14ee4b55805531b479208 "2020-05-24" . _:N2fb31f9e6f9b430aabb169df8ef1ff0e "Hinsu,A." . _:N2fb31f9e6f9b430aabb169df8ef1ff0e "Sabara,P." . _:N5812ea42f76e46a3b2d5c9133a932584 . _:N2fb31f9e6f9b430aabb169df8ef1ff0e "Kanani,A." . _:N34020c72a9b14ee4b55805531b479208 . _:N2fb31f9e6f9b430aabb169df8ef1ff0e "Patel,R." . _:N2fb31f9e6f9b430aabb169df8ef1ff0e "Bagatharia,S." . _:N34020c72a9b14ee4b55805531b479208 . _:N2fb31f9e6f9b430aabb169df8ef1ff0e "Raval,J." . _:N2fb31f9e6f9b430aabb169df8ef1ff0e "Pandya,M." . _:N2fb31f9e6f9b430aabb169df8ef1ff0e "Puvar,A." . _:N2fb31f9e6f9b430aabb169df8ef1ff0e "Kadri,A.M." . _:N34020c72a9b14ee4b55805531b479208 . _:N2fb31f9e6f9b430aabb169df8ef1ff0e "Joshi,M." . _:N2fb31f9e6f9b430aabb169df8ef1ff0e "Patel,N." . "MT847228.1" . _:Nd312587dd3214391b72df9c9a60a0792 "Goswami,B." . _:Nd312587dd3214391b72df9c9a60a0792 "Osman,E." . _:Nd312587dd3214391b72df9c9a60a0792 . _:Nb4da79126b0f456db9da92b25ee0bf72 . _:N200bc8dce3a748278a48f6ba680dd505 . _:Nd312587dd3214391b72df9c9a60a0792 "Ray,U.C." . _:Nb4da79126b0f456db9da92b25ee0bf72 . _:Nc04427fe5513443188e6135c60611ac5 . _:Nec6c98ce745245af95ed49aebf4e03cb . _:Nd312587dd3214391b72df9c9a60a0792 "Al Din,S.M.S." . _:Nec6c98ce745245af95ed49aebf4e03cb . _:Nc04427fe5513443188e6135c60611ac5 "SARS-CoV-2/human/BGD/BCSIR_NILMRC_321/2020" . _:Nd312587dd3214391b72df9c9a60a0792 "Yeasmin,M." . _:Nd312587dd3214391b72df9c9a60a0792 "Uzzaman,M.S." . _:Nd312587dd3214391b72df9c9a60a0792 "Khan,M.S." . _:N200bc8dce3a748278a48f6ba680dd505 "DRAGEN RNA Pathogen Detection v. 3.5.14" . _:Nd312587dd3214391b72df9c9a60a0792 "Sarkar,M.M.H." . _:Nd312587dd3214391b72df9c9a60a0792 "Ghosh,A.K." . _:Nd312587dd3214391b72df9c9a60a0792 "Molla,M.M.A." . _:Nb4da79126b0f456db9da92b25ee0bf72 "MT847228.1" . _:Nb4da79126b0f456db9da92b25ee0bf72 . _:Nd312587dd3214391b72df9c9a60a0792 "Jahan,I." . _:Nd312587dd3214391b72df9c9a60a0792 "Mohammad Mahmud,A.S." . _:Nd312587dd3214391b72df9c9a60a0792 "Banu,T.A." . _:Nd312587dd3214391b72df9c9a60a0792 "Shamsuzzaman,A." . _:Nd312587dd3214391b72df9c9a60a0792 "Hossain,M.S." . _:N200bc8dce3a748278a48f6ba680dd505 . _:Nd312587dd3214391b72df9c9a60a0792 "Habib,M.A." . _:Nb4da79126b0f456db9da92b25ee0bf72 "2020-05-31" . _:Nd312587dd3214391b72df9c9a60a0792 "Akter,S." . _:Nd312587dd3214391b72df9c9a60a0792 "Sajib,S.A." . _:Nd312587dd3214391b72df9c9a60a0792 "Taznin,T." . _:Nd312587dd3214391b72df9c9a60a0792 "Nafisa,T." . _:Nc04427fe5513443188e6135c60611ac5 . _:Nb4da79126b0f456db9da92b25ee0bf72 . "MT627413.1" . _:Ncbc0cb1b37df4769a323c7cfcefe8a30 . _:Ne1ad6113f259457fbdbca6ee64f5be4d "Quest Diagnostics, 33608 Ortega Hwy, San Juan Capistrano, CA 92675, USA" . _:Ne1ad6113f259457fbdbca6ee64f5be4d "Infectious Diseases" . _:Ne1ad6113f259457fbdbca6ee64f5be4d . _:Ne1ad6113f259457fbdbca6ee64f5be4d "Owen,R." . _:N92663ac5c0354752a43308c28b52bc06 "SARS-CoV-2/human/USA/CA-QDX-86/2020" . _:Ne1ad6113f259457fbdbca6ee64f5be4d "Kagan,R.M." . _:Ncbc0cb1b37df4769a323c7cfcefe8a30 . _:N9741133ed6a5454aaaae8ada9af2ef17 . _:N92663ac5c0354752a43308c28b52bc06 . _:Nbb1a6d737cd84f23bb17be65be1148c9 . _:Nbb1a6d737cd84f23bb17be65be1148c9 "bwa v. 0.7.17-r1188; iVar v. 1.2.2" . _:Nbb1a6d737cd84f23bb17be65be1148c9 . _:N9741133ed6a5454aaaae8ada9af2ef17 "Quest Diagnostics" . _:N9741133ed6a5454aaaae8ada9af2ef17 "MT627413.1" . _:Ne1ad6113f259457fbdbca6ee64f5be4d "Rosenthal,S.H." . _:Ne1ad6113f259457fbdbca6ee64f5be4d "Anderson,B.P." . _:N92663ac5c0354752a43308c28b52bc06 . _:N9741133ed6a5454aaaae8ada9af2ef17 . _:N9741133ed6a5454aaaae8ada9af2ef17 "2020-03-13" . _:N9741133ed6a5454aaaae8ada9af2ef17 . "MT778827.1" . _:N3e88377e21dc4328bad3aefa9b0080ff "MT778827.1" . _:Nbc5bc4f0a21840e3a5eae2bd588ca845 . _:N5dfeb7229c6040f39d4e3a99d6fb18e1 "SARS-CoV-2/human/USA/COVID20-0074/2020" . _:Nb7f146d920f44c5ca70a1afa83f006d1 . _:N4f59dc9db9a44abc86894e2590440815 "DRAGEN v. 3.5.13" . _:Nb7f146d920f44c5ca70a1afa83f006d1 "Flores,H." . _:N4f59dc9db9a44abc86894e2590440815 . _:N3e88377e21dc4328bad3aefa9b0080ff . _:N4f59dc9db9a44abc86894e2590440815 . _:N3e88377e21dc4328bad3aefa9b0080ff . _:N3e88377e21dc4328bad3aefa9b0080ff . _:N5dfeb7229c6040f39d4e3a99d6fb18e1 . _:N3e88377e21dc4328bad3aefa9b0080ff "2020-04-01" . _:N3e88377e21dc4328bad3aefa9b0080ff . _:Nbc5bc4f0a21840e3a5eae2bd588ca845 . _:N5dfeb7229c6040f39d4e3a99d6fb18e1 . "MT528615.1" . _:N9da18c275e5e471d973a18a5bad843a9 . _:Nd9fa9c93f7f74c99be10006f7434dace "Dittmer,D." . _:N96700c35856842769c061b51eeaa1ace . _:Nd9fa9c93f7f74c99be10006f7434dace "McNamara,R.P." . _:N2a894f6c57074c2ba5dbec90b70cc589 "2020-04-15" . _:N45aa5cf8f47243638dc8fb094cd492e5 . _:N2a894f6c57074c2ba5dbec90b70cc589 . _:N9da18c275e5e471d973a18a5bad843a9 . _:Nd9fa9c93f7f74c99be10006f7434dace "Bailey,A.G." . _:N96700c35856842769c061b51eeaa1ace . _:Nd9fa9c93f7f74c99be10006f7434dace "Seltzer,T.A." . _:N45aa5cf8f47243638dc8fb094cd492e5 . _:Nd9fa9c93f7f74c99be10006f7434dace "Villamor,F." . _:N2a894f6c57074c2ba5dbec90b70cc589 "MT528615.1" . _:Nd9fa9c93f7f74c99be10006f7434dace "Vahrson,W." . _:N2a894f6c57074c2ba5dbec90b70cc589 . _:N2a894f6c57074c2ba5dbec90b70cc589 "The 'collection_date' is estimated (the original date was: 2020-04)" . _:Nd9fa9c93f7f74c99be10006f7434dace "Pluta,L.J." . _:Nd9fa9c93f7f74c99be10006f7434dace "Eason,A.B." . _:Nd9fa9c93f7f74c99be10006f7434dace "University of North Carolina, 450 West Drive, Chapel Hill, NC 27514, USA" . _:Nd9fa9c93f7f74c99be10006f7434dace "Moorad,R." . _:Nd9fa9c93f7f74c99be10006f7434dace "Microbiology & Immunology" . _:N2a894f6c57074c2ba5dbec90b70cc589 . _:Nd9fa9c93f7f74c99be10006f7434dace . _:Nd9fa9c93f7f74c99be10006f7434dace "Landis,J.T." . _:N9da18c275e5e471d973a18a5bad843a9 "SARS-CoV-2/human/USA/UNC_200290/2020" . _:Nd9fa9c93f7f74c99be10006f7434dace "Thompson,C." . _:N2a894f6c57074c2ba5dbec90b70cc589 "Dirk Dittmer" . _:Nd9fa9c93f7f74c99be10006f7434dace "Juarez,A." . _:N45aa5cf8f47243638dc8fb094cd492e5 "CLC Genomics Workbench v. 20" . _:Nd9fa9c93f7f74c99be10006f7434dace "Miller,M.B." . _:N2a894f6c57074c2ba5dbec90b70cc589 . _:Nd9fa9c93f7f74c99be10006f7434dace "Caro-Vegas,C.P." . "MT539163.1" . _:N1e57a9fbf3334ae6b7c615ee65ef3123 "Department of Pathology and Labratory Medicine" . _:N1e57a9fbf3334ae6b7c615ee65ef3123 "Anne,P." . _:N03cbfd7d309c4f298449d88133c84bb5 . _:N0a0d4ae286e6499383eedbf0f5a2a325 . _:N03cbfd7d309c4f298449d88133c84bb5 . _:N0a0d4ae286e6499383eedbf0f5a2a325 "viral-ngs v. v2.0.21" . _:N58cd407099f0479ea04511e8b841f94a . _:N58f99d1b04bb4647b0b88be9bf8d6076 "SARS-CoV-2/human/USA/GA-EHC-086H/2020" . _:N03cbfd7d309c4f298449d88133c84bb5 "2020-03-10" . _:N1e57a9fbf3334ae6b7c615ee65ef3123 . _:N03cbfd7d309c4f298449d88133c84bb5 "Ahmed Babiker" . _:N1e57a9fbf3334ae6b7c615ee65ef3123 "Babiker,A." . _:N0a0d4ae286e6499383eedbf0f5a2a325 . _:N03cbfd7d309c4f298449d88133c84bb5 . _:N58cd407099f0479ea04511e8b841f94a . _:N58f99d1b04bb4647b0b88be9bf8d6076 . _:N03cbfd7d309c4f298449d88133c84bb5 . _:N03cbfd7d309c4f298449d88133c84bb5 "MT539163.1" . _:N1e57a9fbf3334ae6b7c615ee65ef3123 "Emory University, 101 Woodruff circle, Atlanta, GA 30322, USA" . _:N58f99d1b04bb4647b0b88be9bf8d6076 . "MT612155.1" . _:N8ddcbe4b03c24d0ba4488b4124982f55 "Zhang,J." . _:N8ddcbe4b03c24d0ba4488b4124982f55 "Weiner,Z." . _:N6c5d0ef0f7094795869f783128dc9349 "2020-04-27" . _:N8ddcbe4b03c24d0ba4488b4124982f55 "Uehara,A." . _:N6c5d0ef0f7094795869f783128dc9349 "MT533203.1" . _:N4665f16ca7c6424eaf6e6615c3bb1d1c . _:N8ddcbe4b03c24d0ba4488b4124982f55 "Li,Y." . _:N8ddcbe4b03c24d0ba4488b4124982f55 "Centers for Disease Control and Prevention, 1600 Clifton Rd, Atlanta, GA 30329, USA" . _:N315687d977ca463cb52aa51f5eb2222e . _:N6c5d0ef0f7094795869f783128dc9349 . _:N4665f16ca7c6424eaf6e6615c3bb1d1c . _:N8ddcbe4b03c24d0ba4488b4124982f55 "Tong,S." . _:N4665f16ca7c6424eaf6e6615c3bb1d1c "SARS-CoV-2/human/USA/VI-CDC-4399/2020" . _:N8ddcbe4b03c24d0ba4488b4124982f55 "Tao,Y." . _:N8ddcbe4b03c24d0ba4488b4124982f55 "Respiratory Viruses Branch" . _:N315687d977ca463cb52aa51f5eb2222e "minimap v. 2.17" . _:Nc6d7f0427cfb402b8bfd90925059a1df . _:Nc6d7f0427cfb402b8bfd90925059a1df . _:N6c5d0ef0f7094795869f783128dc9349 . _:N8ddcbe4b03c24d0ba4488b4124982f55 "Paden,C.R." . _:N315687d977ca463cb52aa51f5eb2222e . _:N6c5d0ef0f7094795869f783128dc9349 . _:N8ddcbe4b03c24d0ba4488b4124982f55 "Bankamp,B." . _:N8ddcbe4b03c24d0ba4488b4124982f55 "Wang,H." . _:N8ddcbe4b03c24d0ba4488b4124982f55 "Queen,K." . _:N6c5d0ef0f7094795869f783128dc9349 . _:N8ddcbe4b03c24d0ba4488b4124982f55 . "MT627922.1" . _:Ne29b5bb87ccc4d59896664810fab8493 "Starita,L.M." . _:N65ec013122194bc8ad1d47789fda0c1e . _:Ne29b5bb87ccc4d59896664810fab8493 "Thompson,M." . _:Ne29b5bb87ccc4d59896664810fab8493 . _:Ne29b5bb87ccc4d59896664810fab8493 "Boeckh,M." . _:N65ec013122194bc8ad1d47789fda0c1e . _:Ne29b5bb87ccc4d59896664810fab8493 "Shendure,J." . _:N330da8ba561446e8b1eac17771d3b958 . _:Ne29b5bb87ccc4d59896664810fab8493 "University of Washington Medical Center" . _:Ne29b5bb87ccc4d59896664810fab8493 "Lacombe,K." . _:Ne29b5bb87ccc4d59896664810fab8493 "Sibley,T.R." . _:Nda00569dc1d0435dac955e3e663b779c . _:Ne29b5bb87ccc4d59896664810fab8493 "Englund,J.A." . _:Ne29b5bb87ccc4d59896664810fab8493 "Wolf,C.R." . _:Ne29b5bb87ccc4d59896664810fab8493 "Famulare,M." . _:Ne29b5bb87ccc4d59896664810fab8493 "Rieder,M.J." . _:N3c87f171b9c842dfb1280f61b56ea56c . _:Ne29b5bb87ccc4d59896664810fab8493 "Lee,J." . _:N65ec013122194bc8ad1d47789fda0c1e "2020-04-23" . _:Ne29b5bb87ccc4d59896664810fab8493 "Fay,K." . _:Ne29b5bb87ccc4d59896664810fab8493 "Chu,H.Y." . _:Nda00569dc1d0435dac955e3e663b779c . _:Ne29b5bb87ccc4d59896664810fab8493 "Richardson,M." . _:N3c87f171b9c842dfb1280f61b56ea56c "SARS-CoV-2/human/USA/WA-S614/2020" . _:Ne29b5bb87ccc4d59896664810fab8493 "Pelle,B." . _:Ne29b5bb87ccc4d59896664810fab8493 "Han,P.D." . _:N330da8ba561446e8b1eac17771d3b958 . _:N65ec013122194bc8ad1d47789fda0c1e . _:Ne29b5bb87ccc4d59896664810fab8493 "Truong,M." . _:N65ec013122194bc8ad1d47789fda0c1e "MT627922.1" . _:N65ec013122194bc8ad1d47789fda0c1e . _:Nda00569dc1d0435dac955e3e663b779c "https://github.com/seattleflu/assembly v. May-2020" . _:Ne29b5bb87ccc4d59896664810fab8493 "Frazar,C.D." . _:Ne29b5bb87ccc4d59896664810fab8493 "Brandstetter,E." . _:Ne29b5bb87ccc4d59896664810fab8493 "Ilcisin,M." . _:Ne29b5bb87ccc4d59896664810fab8493 "Lutz,B.R." . _:Ne29b5bb87ccc4d59896664810fab8493 "Adler,A." . _:Ne29b5bb87ccc4d59896664810fab8493 "Bedford,T." . _:Ne29b5bb87ccc4d59896664810fab8493 "Seattle Flu Study, 1959 NE Pacific Street, Seattle, WA 98195, USA" . _:Ne29b5bb87ccc4d59896664810fab8493 "Nickerson,D.A." . _:N3c87f171b9c842dfb1280f61b56ea56c . "MT451089.1" . _:N78d7fa56355246d785c69ac7ca8af6db . _:Nbef4116f545a4ea081bfee8447506a05 "Schultz,M.B." . _:Nbef4116f545a4ea081bfee8447506a05 "Barreto,I." . _:N4f2a46242e454dd08dfaa10ff41375c1 "Victorian Infectious Diseases Reference Laboratory (VIDRL)" . _:Nbef4116f545a4ea081bfee8447506a05 "Wapling,J." . _:Nbef4116f545a4ea081bfee8447506a05 "Meumann,E." . _:N4f2a46242e454dd08dfaa10ff41375c1 . _:Nbef4116f545a4ea081bfee8447506a05 "Salles de Sousa,A." . _:N496bf7b170984543af841b12c9c5e1ab . _:Nbef4116f545a4ea081bfee8447506a05 "Dakh,F." . _:N4f2a46242e454dd08dfaa10ff41375c1 "MT612196.1" . _:N496bf7b170984543af841b12c9c5e1ab "minimap2 v. 2.17; iVar v. 1.2.1; samtools v. 1.10" . _:Nbef4116f545a4ea081bfee8447506a05 "Soares da Silva,E." . _:Nbef4116f545a4ea081bfee8447506a05 "Baird,R." . _:Nbef4116f545a4ea081bfee8447506a05 "Canisia,D." . _:Nbef4116f545a4ea081bfee8447506a05 "Jayanti Pereira Tilman,A." . _:N78d7fa56355246d785c69ac7ca8af6db . _:Nbef4116f545a4ea081bfee8447506a05 . _:N4f2a46242e454dd08dfaa10ff41375c1 "2020-01-15" . _:N50d446de6229429385b36b4c230ff3ab "SARS-CoV-2/human/AUS/VIC1586/2020" . _:N4f2a46242e454dd08dfaa10ff41375c1 "The 'collection_date' is estimated (the original date was: 2020)" . _:N4f2a46242e454dd08dfaa10ff41375c1 . _:Nbef4116f545a4ea081bfee8447506a05 "Sherry,N." . _:Nbef4116f545a4ea081bfee8447506a05 "Seemann,T." . _:Nbef4116f545a4ea081bfee8447506a05 "Douglas,N." . _:Nbef4116f545a4ea081bfee8447506a05 "Marr,I." . _:N4f2a46242e454dd08dfaa10ff41375c1 . _:Nbef4116f545a4ea081bfee8447506a05 "Freeman,K." . _:N496bf7b170984543af841b12c9c5e1ab . _:N50d446de6229429385b36b4c230ff3ab . _:Nbef4116f545a4ea081bfee8447506a05 "Dolores de Jesus da Costa,M." . _:Nbef4116f545a4ea081bfee8447506a05 "Druce,J." . _:Nbef4116f545a4ea081bfee8447506a05 "Caly,L." . _:Nbef4116f545a4ea081bfee8447506a05 "Ximenes,J." . _:N50d446de6229429385b36b4c230ff3ab . _:Nbef4116f545a4ea081bfee8447506a05 "Francis,J." . _:Nbef4116f545a4ea081bfee8447506a05 "Sait,M." . _:Nbef4116f545a4ea081bfee8447506a05 "Antonia da Costa,E." . "MT614533.1" . _:N493bb03f03284611b62478d7ca662abf "2020-03-14" . _:Ndb65554053ca4019adcfc3a182f43374 "Rosenthal,S.H." . _:Nd5d217b483534bcfa78695e2654c919e . _:Ndb65554053ca4019adcfc3a182f43374 "Quest Diagnostics, 33608 Ortega Hwy, San Juan Capistrano, CA 92675, USA" . _:Na6be144e6bb34da5b6104af45896fcca . _:Ndb65554053ca4019adcfc3a182f43374 "Kagan,R.M." . _:Ndb65554053ca4019adcfc3a182f43374 . _:N493bb03f03284611b62478d7ca662abf "MT614533.1" . _:Nd5d217b483534bcfa78695e2654c919e . _:Nb8544995b5cb4f7893e9d4231df3c0bb "bwa v. 0.7.17-r1188; iVar v. 1.2.2" . _:N493bb03f03284611b62478d7ca662abf "Quest Diagnostics" . _:N493bb03f03284611b62478d7ca662abf . _:Nd5d217b483534bcfa78695e2654c919e "SARS-CoV-2/human/USA/MA-QDX-135/2020" . _:Ndb65554053ca4019adcfc3a182f43374 "Infectious Diseases" . _:Nb8544995b5cb4f7893e9d4231df3c0bb . _:Ndb65554053ca4019adcfc3a182f43374 "Anderson,B.P." . _:N493bb03f03284611b62478d7ca662abf . _:Na6be144e6bb34da5b6104af45896fcca . _:Nb8544995b5cb4f7893e9d4231df3c0bb . _:N493bb03f03284611b62478d7ca662abf . _:Ndb65554053ca4019adcfc3a182f43374 "Owen,R." . "MT632866.1" . _:N4d69533932344e408e666fcbaea4e926 "Hiatt,B." . _:N0ae540a3cdbf4877a9a33311dcbc98c1 . _:N4d69533932344e408e666fcbaea4e926 "Pelle,B." . _:N4d69533932344e408e666fcbaea4e926 "Lutz,B.R." . _:N4d69533932344e408e666fcbaea4e926 "Adler,A." . _:N4d69533932344e408e666fcbaea4e926 "Sibley,T.R." . _:N07172617652b4010a300d8f6189a4e4b "https://github.com/seattleflu/assembly v. April-2020" . _:N0ae540a3cdbf4877a9a33311dcbc98c1 . _:N4d69533932344e408e666fcbaea4e926 "Boeckh,M." . _:N4d69533932344e408e666fcbaea4e926 "Bedford,T." . _:N4d69533932344e408e666fcbaea4e926 "Englund,J.A." . _:N3225e8d216084677ac6f1a7f40e36a4b . _:N4d69533932344e408e666fcbaea4e926 "Truong,M." . _:N4d69533932344e408e666fcbaea4e926 "Starita,L.M." . _:N4d69533932344e408e666fcbaea4e926 "Nickerson,D.A." . _:N4d69533932344e408e666fcbaea4e926 "Frazar,C.D." . _:N4d69533932344e408e666fcbaea4e926 "Thompson,M." . _:N4d69533932344e408e666fcbaea4e926 "Fay,K." . _:N3225e8d216084677ac6f1a7f40e36a4b . _:N4d69533932344e408e666fcbaea4e926 "Seattle Flu Study, 1959 NE Pacific Street, Seattle, WA 98195, USA" . _:N07172617652b4010a300d8f6189a4e4b . _:N0ae540a3cdbf4877a9a33311dcbc98c1 "MT632866.1" . _:N4d69533932344e408e666fcbaea4e926 "Han,P.D." . _:N0ae540a3cdbf4877a9a33311dcbc98c1 . _:N4d69533932344e408e666fcbaea4e926 "Lindquist,S." . _:N0ae540a3cdbf4877a9a33311dcbc98c1 "2020-03-31" . _:N4d69533932344e408e666fcbaea4e926 "Dykema,P." . _:N83601a52a14a4d9c8fe86afe146aa429 . _:N4d69533932344e408e666fcbaea4e926 "Wolf,C.R." . _:N0ae540a3cdbf4877a9a33311dcbc98c1 . _:N4d69533932344e408e666fcbaea4e926 . _:N4d69533932344e408e666fcbaea4e926 "University of Washington Medical Center" . _:N4d69533932344e408e666fcbaea4e926 "Lee,J." . _:N4d69533932344e408e666fcbaea4e926 "Lacombe,K." . _:N07172617652b4010a300d8f6189a4e4b . _:N4d69533932344e408e666fcbaea4e926 "Shendure,J." . _:N83601a52a14a4d9c8fe86afe146aa429 . _:N4d69533932344e408e666fcbaea4e926 "Brandstetter,E." . _:N4d69533932344e408e666fcbaea4e926 "Ilcisin,M." . _:N4d69533932344e408e666fcbaea4e926 "Rieder,M.J." . _:N3225e8d216084677ac6f1a7f40e36a4b "SARS-CoV-2/human/USA/WA-S437/2020" . _:N4d69533932344e408e666fcbaea4e926 "Gautom,R." . _:N4d69533932344e408e666fcbaea4e926 "Chu,H.Y." . _:N4d69533932344e408e666fcbaea4e926 "Richardson,M." . _:N4d69533932344e408e666fcbaea4e926 "Melly,G." . _:N4d69533932344e408e666fcbaea4e926 "Famulare,M." . "MT831299.1" . _:N16fccc9d21c54d72b9a04f9ec3809e79 "Sibley,T.R." . _:N978c29ad774744b4be1acb2cba5a08e9 . _:N16fccc9d21c54d72b9a04f9ec3809e79 "Englund,J.A." . _:N16fccc9d21c54d72b9a04f9ec3809e79 "Bedford,T." . _:N16fccc9d21c54d72b9a04f9ec3809e79 "Rieder,M.J." . _:N16fccc9d21c54d72b9a04f9ec3809e79 "Adler,A." . _:N16fccc9d21c54d72b9a04f9ec3809e79 "Melly,G." . _:N978c29ad774744b4be1acb2cba5a08e9 . _:N16fccc9d21c54d72b9a04f9ec3809e79 "Seattle Flu Study, 1959 NE Pacific Street, Seattle, WA 98195, USA" . _:N16fccc9d21c54d72b9a04f9ec3809e79 "Brandstetter,E." . _:N16fccc9d21c54d72b9a04f9ec3809e79 "Famulare,M." . _:N16fccc9d21c54d72b9a04f9ec3809e79 "Lindquist,S." . _:N16fccc9d21c54d72b9a04f9ec3809e79 "Chu,H.Y." . _:N16fccc9d21c54d72b9a04f9ec3809e79 "Shendure,J." . _:N16fccc9d21c54d72b9a04f9ec3809e79 "Gautom,R." . _:N0ef43d8f082d49c7bd9ef4156339e1b7 . _:N2570b060a94f4263aa5ef3699b633fd6 . _:N16fccc9d21c54d72b9a04f9ec3809e79 "Richardson,M." . _:N16fccc9d21c54d72b9a04f9ec3809e79 "Starita,L.M." . _:N16fccc9d21c54d72b9a04f9ec3809e79 "Thompson,M." . _:N16fccc9d21c54d72b9a04f9ec3809e79 "Lee,J." . _:N16fccc9d21c54d72b9a04f9ec3809e79 "Dykema,P." . _:N16fccc9d21c54d72b9a04f9ec3809e79 "Nickerson,D.A." . _:N16fccc9d21c54d72b9a04f9ec3809e79 "Han,P.D." . _:N2570b060a94f4263aa5ef3699b633fd6 "https://github.com/seattleflu/assembly v. July-2020" . _:N16fccc9d21c54d72b9a04f9ec3809e79 "University of Washington Medical Center" . _:N978c29ad774744b4be1acb2cba5a08e9 "2020-06-03" . _:N978c29ad774744b4be1acb2cba5a08e9 "MT831299.1" . _:N16fccc9d21c54d72b9a04f9ec3809e79 "Lacombe,K." . _:Ne4952d4f167d4185b9c509e31a738068 "SARS-CoV-2/human/USA/WA-S1930/2020" . _:N16fccc9d21c54d72b9a04f9ec3809e79 "Pelle,B." . _:N16fccc9d21c54d72b9a04f9ec3809e79 . _:N978c29ad774744b4be1acb2cba5a08e9 . _:N16fccc9d21c54d72b9a04f9ec3809e79 "Truong,M." . _:N16fccc9d21c54d72b9a04f9ec3809e79 "Ilcisin,M." . _:Ne4952d4f167d4185b9c509e31a738068 . _:N0ef43d8f082d49c7bd9ef4156339e1b7 . _:Ne4952d4f167d4185b9c509e31a738068 . _:N16fccc9d21c54d72b9a04f9ec3809e79 "Fay,K." . _:N2570b060a94f4263aa5ef3699b633fd6 . _:N16fccc9d21c54d72b9a04f9ec3809e79 "Hiatt,B." . _:N16fccc9d21c54d72b9a04f9ec3809e79 "Lutz,B.R." . _:N978c29ad774744b4be1acb2cba5a08e9 . _:N16fccc9d21c54d72b9a04f9ec3809e79 "Boeckh,M." . _:N16fccc9d21c54d72b9a04f9ec3809e79 "Frazar,C.D." . _:N16fccc9d21c54d72b9a04f9ec3809e79 "Wolf,C.R." . "MT703998.1" . _:N8439f616f4014b8a824ba04e7f0202eb "Sherry,N." . _:N8439f616f4014b8a824ba04e7f0202eb "Barreto,I." . _:N8439f616f4014b8a824ba04e7f0202eb "Seemann,T." . _:N47b7608803bb4e1191b285b602f3028d "SARS-CoV-2/human/AUS/VIC1292/2020" . _:Na17b3cc53fbf47368855725ed3e0bab7 . _:N47b7608803bb4e1191b285b602f3028d . _:N8439f616f4014b8a824ba04e7f0202eb "Francis,J." . _:N8439f616f4014b8a824ba04e7f0202eb . _:Ne5e67d903aa6486780a8a8250551755b "2020-04-09" . _:N8439f616f4014b8a824ba04e7f0202eb "Ximenes,J." . _:N8439f616f4014b8a824ba04e7f0202eb "Sait,M." . _:Ne5e67d903aa6486780a8a8250551755b "MT641735.1" . _:Na17b3cc53fbf47368855725ed3e0bab7 "minimap2 v. 2.17; iVar v. 1.2.1; samtools v. 1.10" . _:N8439f616f4014b8a824ba04e7f0202eb "Baird,R." . _:N30209ff545994d0aad44b511cf775c7f . _:N8439f616f4014b8a824ba04e7f0202eb "Douglas,N." . _:N8439f616f4014b8a824ba04e7f0202eb "Meumann,E." . _:N8439f616f4014b8a824ba04e7f0202eb "Soares da Silva,E." . _:Ne5e67d903aa6486780a8a8250551755b . _:N8439f616f4014b8a824ba04e7f0202eb "Wapling,J." . _:N8439f616f4014b8a824ba04e7f0202eb "Antonia da Costa,E." . _:N8439f616f4014b8a824ba04e7f0202eb "Caly,L." . _:Ne5e67d903aa6486780a8a8250551755b . _:Ne5e67d903aa6486780a8a8250551755b . _:N8439f616f4014b8a824ba04e7f0202eb "Druce,J." . _:Ne5e67d903aa6486780a8a8250551755b "Victorian Infectious Diseases Reference Laboratory (VIDRL)" . _:N8439f616f4014b8a824ba04e7f0202eb "Salles de Sousa,A." . _:N8439f616f4014b8a824ba04e7f0202eb "Dolores de Jesus da Costa,M." . _:N8439f616f4014b8a824ba04e7f0202eb "Marr,I." . _:N8439f616f4014b8a824ba04e7f0202eb "Jayanti Pereira Tilman,A." . _:N8439f616f4014b8a824ba04e7f0202eb "Freeman,K." . _:N30209ff545994d0aad44b511cf775c7f . _:N47b7608803bb4e1191b285b602f3028d . _:N8439f616f4014b8a824ba04e7f0202eb "Dakh,F." . _:N8439f616f4014b8a824ba04e7f0202eb "Canisia,D." . _:N8439f616f4014b8a824ba04e7f0202eb "Schultz,M.B." . _:Na17b3cc53fbf47368855725ed3e0bab7 . "MT811485.1" . _:N0183916916f344809fcd1a9bb40bb111 . _:Nd874e2c8ca1242b9ac174c672739e13a "SARS-CoV-2/human/USA/SEARCH-1039-SAN/2020" . _:N8534fe5c5b2a4c0a8b9a878c8941698d . _:N9dbdb9fa265048efb9b489be9f07597f "Shin,J.H." . _:N9dbdb9fa265048efb9b489be9f07597f . _:Nd874e2c8ca1242b9ac174c672739e13a . _:N67df1d4ee0584744b9b5ca102d02afeb . _:N0183916916f344809fcd1a9bb40bb111 . _:N67df1d4ee0584744b9b5ca102d02afeb . _:N8534fe5c5b2a4c0a8b9a878c8941698d "iVar v. 1.2.2" . _:N9dbdb9fa265048efb9b489be9f07597f "Pride,D." . _:Nd874e2c8ca1242b9ac174c672739e13a . _:N0183916916f344809fcd1a9bb40bb111 . _:N0183916916f344809fcd1a9bb40bb111 "MT811485.1" . _:N9dbdb9fa265048efb9b489be9f07597f "The Scripps Research Institute, 10550 N Torrey Pines Rd, San Diego, CA 92122, USA" . _:N0183916916f344809fcd1a9bb40bb111 "2020-06-21" . _:N9dbdb9fa265048efb9b489be9f07597f "SEARCH Alliance,S.D." . _:N0183916916f344809fcd1a9bb40bb111 . _:N8534fe5c5b2a4c0a8b9a878c8941698d . _:N9dbdb9fa265048efb9b489be9f07597f "Department of Immunology" . "MT520536.1" . _:N31cf9593eb30401e81751723617d6bb2 "Harris,J." . _:N31cf9593eb30401e81751723617d6bb2 "Ryan,E." . _:Na027a59991e741aeabd14d0f73ba89bf . _:N31cf9593eb30401e81751723617d6bb2 "Lin,A.E." . _:N31cf9593eb30401e81751723617d6bb2 "Adams,G." . _:Ne0f8abee8ff94bd0a3d0fa6ddfecbe18 . _:N31cf9593eb30401e81751723617d6bb2 "Reilly,S." . _:N31cf9593eb30401e81751723617d6bb2 "Normandin,E." . _:N31cf9593eb30401e81751723617d6bb2 "Cerrato,F." . _:Na027a59991e741aeabd14d0f73ba89bf "https://github.com/broadinstitute/viral-pipelines/blob/master/pipes/WDL/workflows/assemble_refbased.wdl v. 2.0.21.5-rc6" . _:N31cf9593eb30401e81751723617d6bb2 "Anahtar,M." . _:N31cf9593eb30401e81751723617d6bb2 "Chapman,S.B." . _:Na027a59991e741aeabd14d0f73ba89bf . _:N07b54c5c646d44d9b3d2fd01e208d8d3 "SARS-CoV-2/human/USA/MA_MGH_00295/2020" . _:Na027a59991e741aeabd14d0f73ba89bf "460.5548556"^^ . _:N31cf9593eb30401e81751723617d6bb2 "LaRocque,R." . _:N31cf9593eb30401e81751723617d6bb2 "Neumann,A." . _:N31cf9593eb30401e81751723617d6bb2 "DeRuff,K." . _:N31cf9593eb30401e81751723617d6bb2 "Carter,A." . _:N07b54c5c646d44d9b3d2fd01e208d8d3 . _:N31cf9593eb30401e81751723617d6bb2 "Shaw,B." . _:Ne0f8abee8ff94bd0a3d0fa6ddfecbe18 . _:N31cf9593eb30401e81751723617d6bb2 "Turbett,S." . _:Ne0f8abee8ff94bd0a3d0fa6ddfecbe18 "Massachusetts General Hospital" . _:N31cf9593eb30401e81751723617d6bb2 "Lemieux,J.E." . _:N31cf9593eb30401e81751723617d6bb2 "Park,D.J." . _:N31cf9593eb30401e81751723617d6bb2 "Slater,D." . _:N31cf9593eb30401e81751723617d6bb2 "Smole,S." . _:Ne0f8abee8ff94bd0a3d0fa6ddfecbe18 "2020-04-01" . _:N2c11d73704264b08a30ec6db6d0fcfb5 . _:N31cf9593eb30401e81751723617d6bb2 "Lagerborg,K." . _:N31cf9593eb30401e81751723617d6bb2 "Tomkins-Tinch,C." . _:N31cf9593eb30401e81751723617d6bb2 "Gallagher,G." . _:N31cf9593eb30401e81751723617d6bb2 "MacInnis,B.L." . _:Ne0f8abee8ff94bd0a3d0fa6ddfecbe18 . _:N31cf9593eb30401e81751723617d6bb2 "Siddle,K.J." . _:N31cf9593eb30401e81751723617d6bb2 "Loreth,C." . _:N31cf9593eb30401e81751723617d6bb2 "Bauer,M." . _:N31cf9593eb30401e81751723617d6bb2 "Cusick,C." . _:N31cf9593eb30401e81751723617d6bb2 "Flowers,K." . _:N31cf9593eb30401e81751723617d6bb2 "Rosenberg,E." . _:N31cf9593eb30401e81751723617d6bb2 "Branda,J." . _:Ne0f8abee8ff94bd0a3d0fa6ddfecbe18 . _:N31cf9593eb30401e81751723617d6bb2 "Rudy,M." . _:Ne0f8abee8ff94bd0a3d0fa6ddfecbe18 "MT520536.1" . _:N07b54c5c646d44d9b3d2fd01e208d8d3 . _:N31cf9593eb30401e81751723617d6bb2 "Pierce,V." . _:N31cf9593eb30401e81751723617d6bb2 "Birren,B.W." . _:N31cf9593eb30401e81751723617d6bb2 "Sabeti,P.C." . _:N31cf9593eb30401e81751723617d6bb2 "Gnirke,A." . _:N31cf9593eb30401e81751723617d6bb2 . _:N31cf9593eb30401e81751723617d6bb2 "Gladden-Young,A." . _:N31cf9593eb30401e81751723617d6bb2 "Chaluvadi,S." . _:N2c11d73704264b08a30ec6db6d0fcfb5 . "MT358690.1" . _:Nce16f02017da4a1ab32125216a0adfe8 "Nilyanimit,P." . _:Nce16f02017da4a1ab32125216a0adfe8 . _:N2598213217ed4f048874d99ca2f40205 . _:N2983fcaf4d304840b331bc2969d457d3 . _:Nd57b808d4c994dcfb3c399595e1393e4 "SARS-CoV-2/human/THA/CO63-989/2020" . _:N2598213217ed4f048874d99ca2f40205 "2020-03-14" . _:Nd57b808d4c994dcfb3c399595e1393e4 . _:Nce16f02017da4a1ab32125216a0adfe8 "Suwannakarn,K." . _:N2598213217ed4f048874d99ca2f40205 "MT503078.1" . _:Nd57b808d4c994dcfb3c399595e1393e4 . _:Nce16f02017da4a1ab32125216a0adfe8 "Auphimai,C." . _:N059189fbc1084aa58d10cb9b03dafd0a . _:N2598213217ed4f048874d99ca2f40205 . _:Nce16f02017da4a1ab32125216a0adfe8 "Poovorawan,Y." . _:N2983fcaf4d304840b331bc2969d457d3 . _:Nce16f02017da4a1ab32125216a0adfe8 "Puenpa,J." . _:Nce16f02017da4a1ab32125216a0adfe8 "Yorsaeng,R." . _:N2598213217ed4f048874d99ca2f40205 . _:Nce16f02017da4a1ab32125216a0adfe8 "Chansaenroj,J." . _:N059189fbc1084aa58d10cb9b03dafd0a . "SRR11621868" . _:N7ca35e084c33459987c2e45cb4957af2 . _:N6e244e9b14904b76b43724754469df1d . _:N7ca35e084c33459987c2e45cb4957af2 "Laboratory Medicine; University of Washington; 1100 Fairview Avenue North, E5-110; Seattle; WA; USA; Postal code 98109" . _:N7ca35e084c33459987c2e45cb4957af2 "Laboratory Medicine" . _:N174bd4ecd46144d4ac2de8c3d00590f0 "The real 'collection_date' is missing" . _:N7ca35e084c33459987c2e45cb4957af2 "University of Washington" . _:N7ca35e084c33459987c2e45cb4957af2 "proychou@uw.edu" . _:N71ac8fc9b3ed4396832ed7d75c13239e . _:N6e244e9b14904b76b43724754469df1d . _:N005bdf78909740bbbbe20483ea5b5b75 . _:N005bdf78909740bbbbe20483ea5b5b75 . _:N174bd4ecd46144d4ac2de8c3d00590f0 "University of Washington Virology Lab" . _:N7ca35e084c33459987c2e45cb4957af2 "Pavitra Roychoudhury" . _:N7ca35e084c33459987c2e45cb4957af2 "Laboratory Medicine; University of Washington; 1100 Fairview Avenue North, E5-110; Seattle; WA; USA; Postal code 98109" . _:N005bdf78909740bbbbe20483ea5b5b75 "LIBRARY_STRATEGY: RNA-Seq;" . _:N174bd4ecd46144d4ac2de8c3d00590f0 "1970-01-01" . _:N71ac8fc9b3ed4396832ed7d75c13239e . _:N174bd4ecd46144d4ac2de8c3d00590f0 . _:N7ca35e084c33459987c2e45cb4957af2 "PRJNA610428" . _:N174bd4ecd46144d4ac2de8c3d00590f0 "SRR11621868" . _:N7ca35e084c33459987c2e45cb4957af2 "SRA1069823" . _:N174bd4ecd46144d4ac2de8c3d00590f0 . "MT517429.1" . _:N0a9a77c5d734458cb289ea40af51d57d . _:N7d8bf78f0fb74856bb359b1baccdeba4 . _:Ndceac3d656b3475896fc89d0cd74a59d . _:N7d8bf78f0fb74856bb359b1baccdeba4 . _:N33aad2be007f4d90830c269a63f23483 "SARS-CoV-2/human/CHN/JS(5)/2020" . _:N0a9a77c5d734458cb289ea40af51d57d . _:Ndceac3d656b3475896fc89d0cd74a59d "MT415840.1" . _:Ndceac3d656b3475896fc89d0cd74a59d . _:Ndceac3d656b3475896fc89d0cd74a59d . _:N33aad2be007f4d90830c269a63f23483 . _:N33aad2be007f4d90830c269a63f23483 . _:Ne3309be4a4134f7795798faaa301a505 "Yan,Y." . _:Ndceac3d656b3475896fc89d0cd74a59d "2020-02-02" . _:Ne3309be4a4134f7795798faaa301a505 . "MT517423.1" . _:N7beb641ab09d46f19ef8f5d54d869fdc . _:N7beb641ab09d46f19ef8f5d54d869fdc . _:N11fcda39300948d9bcea58357dfdd07f "Broz,P." . _:N11fcda39300948d9bcea58357dfdd07f "Macek,M." . _:N487735f3df0d45d5bbd6adb9714d85b7 "2020-03-28" . _:N00485b55a1c54cae8c8c174c3e6480c9 "SARS-CoV-2/human/CZE/IAB_9/2020" . _:N11fcda39300948d9bcea58357dfdd07f "Kvapil,P." . _:Nb6c628bc198f45a1b0d805102d8cd1c5 "viral-ngs v. MAY-2020" . _:N11fcda39300948d9bcea58357dfdd07f "Petr,K." . _:N00485b55a1c54cae8c8c174c3e6480c9 . _:N487735f3df0d45d5bbd6adb9714d85b7 . _:N487735f3df0d45d5bbd6adb9714d85b7 . _:N00485b55a1c54cae8c8c174c3e6480c9 . _:N487735f3df0d45d5bbd6adb9714d85b7 . _:N11fcda39300948d9bcea58357dfdd07f "Jan,G." . _:N11fcda39300948d9bcea58357dfdd07f . _:N487735f3df0d45d5bbd6adb9714d85b7 . _:N11fcda39300948d9bcea58357dfdd07f "Martin,K." . _:Nb6c628bc198f45a1b0d805102d8cd1c5 . _:N11fcda39300948d9bcea58357dfdd07f "Katerina,K." . _:N487735f3df0d45d5bbd6adb9714d85b7 "MT517423.1" . _:Nb6c628bc198f45a1b0d805102d8cd1c5 . "MT642294.1" . _:Ncfaa905035a147d7ba322c9f719c011f "SARS-CoV-2/human/USA/WA-S1093/2020" . _:N4d8208580c77473ba04f8fb683c93d03 "Famulare,M." . _:N4d8208580c77473ba04f8fb683c93d03 "Chu,H.Y." . _:N4d8208580c77473ba04f8fb683c93d03 "Hiatt,B." . _:N5e4f4413cd1144f98823fb0ec22e1591 . _:N4d8208580c77473ba04f8fb683c93d03 "Lee,J." . _:N4d8208580c77473ba04f8fb683c93d03 "Bedford,T." . _:N5ce36be169374d1da7a52f28d3bb43dc "https://github.com/seattleflu/assembly v. June-2020" . _:N4d8208580c77473ba04f8fb683c93d03 "Pelle,B." . _:N4d8208580c77473ba04f8fb683c93d03 "Wolf,C.R." . _:N4d8208580c77473ba04f8fb683c93d03 "Richardson,M." . _:N4d8208580c77473ba04f8fb683c93d03 "Frazar,C.D." . _:N4d8208580c77473ba04f8fb683c93d03 "Sibley,T.R." . _:N354cc798c49849e695c4c456403e6ed1 . _:N4d8208580c77473ba04f8fb683c93d03 "Truong,M." . _:N4d8208580c77473ba04f8fb683c93d03 "Adler,A." . _:N4d8208580c77473ba04f8fb683c93d03 "Nickerson,D.A." . _:N5e4f4413cd1144f98823fb0ec22e1591 . _:N4d8208580c77473ba04f8fb683c93d03 "Lindquist,S." . _:N5ce36be169374d1da7a52f28d3bb43dc . _:N4d8208580c77473ba04f8fb683c93d03 "Dykema,P." . _:N4d8208580c77473ba04f8fb683c93d03 . _:N4d8208580c77473ba04f8fb683c93d03 "Boeckh,M." . _:N4d8208580c77473ba04f8fb683c93d03 "Han,P.D." . _:N354cc798c49849e695c4c456403e6ed1 . _:N4d8208580c77473ba04f8fb683c93d03 "Brandstetter,E." . _:N4d8208580c77473ba04f8fb683c93d03 "Lutz,B.R." . _:Ncfaa905035a147d7ba322c9f719c011f . _:N4d8208580c77473ba04f8fb683c93d03 "Gautom,R." . _:N4d8208580c77473ba04f8fb683c93d03 "Shendure,J." . _:N5e4f4413cd1144f98823fb0ec22e1591 "MT642294.1" . _:Ncfaa905035a147d7ba322c9f719c011f . _:N4d8208580c77473ba04f8fb683c93d03 "University of Washington Medical Center" . _:N4d8208580c77473ba04f8fb683c93d03 "Rieder,M.J." . _:N4d8208580c77473ba04f8fb683c93d03 "Fay,K." . _:N4d8208580c77473ba04f8fb683c93d03 "Melly,G." . _:N5e4f4413cd1144f98823fb0ec22e1591 . _:N4d8208580c77473ba04f8fb683c93d03 "Seattle Flu Study, 1959 NE Pacific Street, Seattle, WA 98195, USA" . _:N5e4f4413cd1144f98823fb0ec22e1591 "2020-05-02" . _:N4d8208580c77473ba04f8fb683c93d03 "Englund,J.A." . _:N5ce36be169374d1da7a52f28d3bb43dc . _:N5e4f4413cd1144f98823fb0ec22e1591 . _:N4d8208580c77473ba04f8fb683c93d03 "Thompson,M." . _:N4d8208580c77473ba04f8fb683c93d03 "Ilcisin,M." . _:N4d8208580c77473ba04f8fb683c93d03 "Lacombe,K." . _:N4d8208580c77473ba04f8fb683c93d03 "Starita,L.M." . "MT584981.1" . _:N4fd20d42a15f4ddea8b5dc42e9f9d13b "Bureau of Laboratories - Division Infectious Disease" . _:N63a1b95b5397478d891c7c5a7f0dfe83 . _:N63a1b95b5397478d891c7c5a7f0dfe83 . _:N7b52ea475d714831ae4ab897eced5b1f . _:N7b52ea475d714831ae4ab897eced5b1f . _:N4fd20d42a15f4ddea8b5dc42e9f9d13b "Riner,D." . _:N4fd20d42a15f4ddea8b5dc42e9f9d13b . _:Ndee23317312d4655be64c47d6164f1f5 . _:N4fd20d42a15f4ddea8b5dc42e9f9d13b "Blankenship,H.M." . _:N7b52ea475d714831ae4ab897eced5b1f . _:N7b52ea475d714831ae4ab897eced5b1f . _:Ndee23317312d4655be64c47d6164f1f5 . _:N63a1b95b5397478d891c7c5a7f0dfe83 "bwa v. 0.7.17; bcftools v. 1.7" . _:N7b52ea475d714831ae4ab897eced5b1f "MT584981.1" . _:Nb07258d74f244bf0bfda37fbed0240cf . _:N4fd20d42a15f4ddea8b5dc42e9f9d13b "Soehnlen,M.K." . _:N7b52ea475d714831ae4ab897eced5b1f "2020-04-15" . _:N4fd20d42a15f4ddea8b5dc42e9f9d13b "Michigan Department of Health and Human Services, 3350 N Martin Luther King Jr Blvd, Lansing, MI 48906, USA" . _:Nb07258d74f244bf0bfda37fbed0240cf "SARS-CoV-2/human/USA/MI-MDHHS-SC20621/2020" . _:Nb07258d74f244bf0bfda37fbed0240cf . "MT704113.1" . _:N677881f4652447eea78e6c65257bf88e "MT704113.1" . _:N677881f4652447eea78e6c65257bf88e . _:N5d62526176574d86891ac25913a502bb . _:N42f975e73d61453c8b0c17d916bba4a8 "BPHL" . _:N07d004c4f07f4091a78c478d7ab86c9e . _:N42f975e73d61453c8b0c17d916bba4a8 "FLDOH, 1217 N Pearl St, Jacksonville, FL 32202, USA" . _:N5d62526176574d86891ac25913a502bb . _:N07d004c4f07f4091a78c478d7ab86c9e . _:N901279ed616a443986be6980f63d2462 . _:N677881f4652447eea78e6c65257bf88e "2020-05-16" . _:N07d004c4f07f4091a78c478d7ab86c9e "SARS-CoV-2/human/USA/FL-BPHL-0295/2020" . _:N42f975e73d61453c8b0c17d916bba4a8 "Blanton,J." . _:N901279ed616a443986be6980f63d2462 "bwa v. 0.7.17; ivar v. 1.2.2" . _:N42f975e73d61453c8b0c17d916bba4a8 "Schmedes,S." . _:N677881f4652447eea78e6c65257bf88e . _:N677881f4652447eea78e6c65257bf88e . _:N901279ed616a443986be6980f63d2462 . _:N42f975e73d61453c8b0c17d916bba4a8 . "MT536975.1" . _:Nde916a1540e843fbabbe89e94997536a "University of North Carolina, 450 West drive, chapel hill, NC 27514, USA" . _:Nde916a1540e843fbabbe89e94997536a "Bailey,A.G." . _:Nde916a1540e843fbabbe89e94997536a "Dittmer,D." . _:N483c65477669476ca893f3bec6ee72b8 "2020-04-15" . _:N4e79ba834c754068a285ac8ba3fbc6b1 . _:Nde916a1540e843fbabbe89e94997536a "Landis,J.T." . _:Nde916a1540e843fbabbe89e94997536a "Vahrson,W." . _:N4e79ba834c754068a285ac8ba3fbc6b1 "SARS-CoV-2/human/USA/UNC_200468/2020" . _:Nde916a1540e843fbabbe89e94997536a "Microbiology & Immunology" . _:N483c65477669476ca893f3bec6ee72b8 . _:N4e79ba834c754068a285ac8ba3fbc6b1 . _:Nde916a1540e843fbabbe89e94997536a "Caro-Vegas,C.P." . _:Nde916a1540e843fbabbe89e94997536a "Seltzer,T.A." . _:Nde916a1540e843fbabbe89e94997536a "Juarez,A." . _:N483c65477669476ca893f3bec6ee72b8 "Dirk Dittmer" . _:N483c65477669476ca893f3bec6ee72b8 . _:Nde916a1540e843fbabbe89e94997536a . _:Nde916a1540e843fbabbe89e94997536a "Villamor,F." . _:N483c65477669476ca893f3bec6ee72b8 "MT551607.1" . _:Nde916a1540e843fbabbe89e94997536a "Miller,M.B." . _:Nde916a1540e843fbabbe89e94997536a "Eason,A.B." . _:N22956abbd6b245ef898f19ec903d2ae3 . _:Nd986eed3467b4e738ce78876244ba5d9 "CLC Genomics Workbench v. 20" . _:N22956abbd6b245ef898f19ec903d2ae3 . _:Nde916a1540e843fbabbe89e94997536a "Thompson,C." . _:N483c65477669476ca893f3bec6ee72b8 . _:Nd986eed3467b4e738ce78876244ba5d9 . _:Nd986eed3467b4e738ce78876244ba5d9 . _:Nde916a1540e843fbabbe89e94997536a "McNamara,R.P." . _:N483c65477669476ca893f3bec6ee72b8 "The 'collection_date' is estimated (the original date was: 2020-04)" . _:N483c65477669476ca893f3bec6ee72b8 . _:Nde916a1540e843fbabbe89e94997536a "Moorad,R." . _:Nde916a1540e843fbabbe89e94997536a "Pluta,L.J." . "MT628119.1" . _:Nae8775ac95594f19a03d57476912ef04 "CZB Cliahub Consortium,C.C.C." . _:Nd0a9ef0380ef47c7a8da2d7c0bb1f810 . _:Nd0a9ef0380ef47c7a8da2d7c0bb1f810 . _:N2f4e9e516cbf4574b7daac73f945d62a . _:Nae8775ac95594f19a03d57476912ef04 . _:Nc917dc1770dc46bd99a71e67a9125019 "SARS-CoV-2/human/USA/CA-CZB-1404/2020" . _:Nd0a9ef0380ef47c7a8da2d7c0bb1f810 . _:Nd0a9ef0380ef47c7a8da2d7c0bb1f810 . _:Nae8775ac95594f19a03d57476912ef04 "Division of Infectious Diseases" . _:N2f4e9e516cbf4574b7daac73f945d62a . _:N5545f8fd4703434c9e79ab5f69c75768 . _:Nae8775ac95594f19a03d57476912ef04 "Department of Medicine, CZ Biohub, UCSF, 499 Illinois St, San Francisco, CA 94158, USA" . _:Nc917dc1770dc46bd99a71e67a9125019 . _:N5545f8fd4703434c9e79ab5f69c75768 "minimap2 v. 2.17; ivar v. 1.2" . _:Nc917dc1770dc46bd99a71e67a9125019 . _:Nd0a9ef0380ef47c7a8da2d7c0bb1f810 . _:Nd0a9ef0380ef47c7a8da2d7c0bb1f810 "2020-04-20" . _:Nd0a9ef0380ef47c7a8da2d7c0bb1f810 "MT628119.1" . _:N5545f8fd4703434c9e79ab5f69c75768 . "MT612316.1" . _:Nfcf6165b70d14992ad7146fca9af72e6 "Dakh,F." . _:Nfcf6165b70d14992ad7146fca9af72e6 "Sherry,N." . _:Nfcf6165b70d14992ad7146fca9af72e6 "Meumann,E." . _:Nfcf6165b70d14992ad7146fca9af72e6 . _:Nfcf6165b70d14992ad7146fca9af72e6 "Seemann,T." . _:N2530b6b9ccdf4fd49be4bede05797a6b "SARS-CoV-2/human/AUS/VIC1741/2020" . _:Nfcf6165b70d14992ad7146fca9af72e6 "Caly,L." . _:Ndd232481e43844488df78a04ec1ace92 . _:N7df161bc1c334a0ba0a2c6688eb2726a . _:Ndd232481e43844488df78a04ec1ace92 . _:Nb0b3dd5177214de985266f2cadeed7d3 . _:Nb0b3dd5177214de985266f2cadeed7d3 . _:Ndd232481e43844488df78a04ec1ace92 "2020-05-23" . _:Nfcf6165b70d14992ad7146fca9af72e6 "Canisia,D." . _:Nfcf6165b70d14992ad7146fca9af72e6 "Schultz,M.B." . _:Nfcf6165b70d14992ad7146fca9af72e6 "Soares da Silva,E." . _:Nfcf6165b70d14992ad7146fca9af72e6 "Antonia da Costa,E." . _:N2530b6b9ccdf4fd49be4bede05797a6b . _:Nfcf6165b70d14992ad7146fca9af72e6 "Marr,I." . _:Nfcf6165b70d14992ad7146fca9af72e6 "Druce,J." . _:Nfcf6165b70d14992ad7146fca9af72e6 "Wapling,J." . _:N2530b6b9ccdf4fd49be4bede05797a6b . _:Nb0b3dd5177214de985266f2cadeed7d3 "minimap2 v. 2.17; iVar v. 1.2.1; samtools v. 1.10" . _:Ndd232481e43844488df78a04ec1ace92 "Victorian Infectious Diseases Reference Laboratory (VIDRL)" . _:Nfcf6165b70d14992ad7146fca9af72e6 "Jayanti Pereira Tilman,A." . _:Nfcf6165b70d14992ad7146fca9af72e6 "Barreto,I." . _:N7df161bc1c334a0ba0a2c6688eb2726a . _:Ndd232481e43844488df78a04ec1ace92 . _:Ndd232481e43844488df78a04ec1ace92 "MT612316.1" . _:Nfcf6165b70d14992ad7146fca9af72e6 "Freeman,K." . _:Nfcf6165b70d14992ad7146fca9af72e6 "Sait,M." . _:Nfcf6165b70d14992ad7146fca9af72e6 "Francis,J." . _:Nfcf6165b70d14992ad7146fca9af72e6 "Dolores de Jesus da Costa,M." . _:Nfcf6165b70d14992ad7146fca9af72e6 "Douglas,N." . _:Nfcf6165b70d14992ad7146fca9af72e6 "Baird,R." . _:Nfcf6165b70d14992ad7146fca9af72e6 "Salles de Sousa,A." . _:Nfcf6165b70d14992ad7146fca9af72e6 "Ximenes,J." . "MT834217.1" . _:Ne98acee8bdc34fafb5878ca25e38d7bd "Han,P.D." . _:Ne98acee8bdc34fafb5878ca25e38d7bd "Chu,H.Y." . _:Ne0dd8240c12f4aab86c645d63b7cd27e . _:Ne98acee8bdc34fafb5878ca25e38d7bd "Shendure,J." . _:Ne98acee8bdc34fafb5878ca25e38d7bd "Fay,K." . _:Ne98acee8bdc34fafb5878ca25e38d7bd "Thompson,M." . _:Na8d40772988149ac9029a162a3b1832c "SARS-CoV-2/human/USA/WA-S1690/2020" . _:Ne98acee8bdc34fafb5878ca25e38d7bd "Brandstetter,E." . _:Nc554098e5413434b8c11075ca7365f32 . _:Na8d40772988149ac9029a162a3b1832c . _:Ne98acee8bdc34fafb5878ca25e38d7bd "University of Washington Medical Center" . _:Ne98acee8bdc34fafb5878ca25e38d7bd "Adler,A." . _:Ne98acee8bdc34fafb5878ca25e38d7bd "Lacombe,K." . _:Ne98acee8bdc34fafb5878ca25e38d7bd "Richardson,M." . _:Nc554098e5413434b8c11075ca7365f32 . _:Ne0dd8240c12f4aab86c645d63b7cd27e . _:Ne98acee8bdc34fafb5878ca25e38d7bd "Englund,J.A." . _:Ne98acee8bdc34fafb5878ca25e38d7bd . _:Ne98acee8bdc34fafb5878ca25e38d7bd "Sibley,T.R." . _:Ne98acee8bdc34fafb5878ca25e38d7bd "Melly,G." . _:Ne0dd8240c12f4aab86c645d63b7cd27e "MT834217.1" . _:N3ddbcbf4ed1e45a1acf1cee46e2e2646 . _:Ne98acee8bdc34fafb5878ca25e38d7bd "Frazar,C.D." . _:Ne98acee8bdc34fafb5878ca25e38d7bd "Famulare,M." . _:Ne98acee8bdc34fafb5878ca25e38d7bd "Starita,L.M." . _:Ne98acee8bdc34fafb5878ca25e38d7bd "Boeckh,M." . _:N3ddbcbf4ed1e45a1acf1cee46e2e2646 . _:Ne98acee8bdc34fafb5878ca25e38d7bd "Bedford,T." . _:Ne98acee8bdc34fafb5878ca25e38d7bd "Nickerson,D.A." . _:Ne98acee8bdc34fafb5878ca25e38d7bd "Ilcisin,M." . _:Ne0dd8240c12f4aab86c645d63b7cd27e "2020-05-30" . _:Ne98acee8bdc34fafb5878ca25e38d7bd "Truong,M." . _:Na8d40772988149ac9029a162a3b1832c . _:Ne98acee8bdc34fafb5878ca25e38d7bd "Lee,J." . _:Ne98acee8bdc34fafb5878ca25e38d7bd "Dykema,P." . _:N3ddbcbf4ed1e45a1acf1cee46e2e2646 "https://github.com/seattleflu/assembly v. June-2020" . _:Ne0dd8240c12f4aab86c645d63b7cd27e . _:Ne98acee8bdc34fafb5878ca25e38d7bd "Gautom,R." . _:Ne98acee8bdc34fafb5878ca25e38d7bd "Lindquist,S." . _:Ne98acee8bdc34fafb5878ca25e38d7bd "Hiatt,B." . _:Ne98acee8bdc34fafb5878ca25e38d7bd "Rieder,M.J." . _:Ne98acee8bdc34fafb5878ca25e38d7bd "Wolf,C.R." . _:Ne98acee8bdc34fafb5878ca25e38d7bd "Seattle Flu Study, 1959 NE Pacific Street, Seattle, WA 98195, USA" . _:Ne98acee8bdc34fafb5878ca25e38d7bd "Pelle,B." . _:Ne0dd8240c12f4aab86c645d63b7cd27e . _:Ne98acee8bdc34fafb5878ca25e38d7bd "Lutz,B.R." . "MT520375.1" . _:Nb8d4606544d847208cf75e7d2abd9b8f "Lagerborg,K." . _:Ndeaa467c11684c6fa23d696818c7aea7 . _:N93deeea6c02f457f8c178c83ea42c13f "Massachusetts General Hospital" . _:Nb8d4606544d847208cf75e7d2abd9b8f "Lin,A.E." . _:Nb8d4606544d847208cf75e7d2abd9b8f "Anahtar,M." . _:Nb8d4606544d847208cf75e7d2abd9b8f "Cusick,C." . _:Nb8d4606544d847208cf75e7d2abd9b8f "Reilly,S." . _:Nb8d4606544d847208cf75e7d2abd9b8f "MacInnis,B.L." . _:N53b49da76dd24d078856deabd2f85fa7 "https://github.com/broadinstitute/viral-pipelines/blob/master/pipes/WDL/workflows/assemble_refbased.wdl v. 2.0.21.5-rc6" . _:Nb8d4606544d847208cf75e7d2abd9b8f "Normandin,E." . _:Nb8d4606544d847208cf75e7d2abd9b8f "Rudy,M." . _:Nb8d4606544d847208cf75e7d2abd9b8f . _:N93deeea6c02f457f8c178c83ea42c13f "2020-03-07" . _:N1b6222cfd6d3462f97be429a67fc5c57 "SARS-CoV-2/human/USA/MA_MGH_00419/2020" . _:Nb8d4606544d847208cf75e7d2abd9b8f "Flowers,K." . _:Nb8d4606544d847208cf75e7d2abd9b8f "Ryan,E." . _:N93deeea6c02f457f8c178c83ea42c13f . _:N93deeea6c02f457f8c178c83ea42c13f . _:Nb8d4606544d847208cf75e7d2abd9b8f "Gnirke,A." . _:N1b6222cfd6d3462f97be429a67fc5c57 . _:Nb8d4606544d847208cf75e7d2abd9b8f "Adams,G." . _:Nb8d4606544d847208cf75e7d2abd9b8f "Pierce,V." . _:Nb8d4606544d847208cf75e7d2abd9b8f "Turbett,S." . _:Nb8d4606544d847208cf75e7d2abd9b8f "LaRocque,R." . _:Nb8d4606544d847208cf75e7d2abd9b8f "Lemieux,J.E." . _:N53b49da76dd24d078856deabd2f85fa7 "2331.390748"^^ . _:N93deeea6c02f457f8c178c83ea42c13f . _:Nb8d4606544d847208cf75e7d2abd9b8f "Carter,A." . _:Nb8d4606544d847208cf75e7d2abd9b8f "Gallagher,G." . _:N1b6222cfd6d3462f97be429a67fc5c57 . _:N93deeea6c02f457f8c178c83ea42c13f . _:Nb8d4606544d847208cf75e7d2abd9b8f "Sabeti,P.C." . _:Nb8d4606544d847208cf75e7d2abd9b8f "Harris,J." . _:Nb8d4606544d847208cf75e7d2abd9b8f "DeRuff,K." . _:Nb8d4606544d847208cf75e7d2abd9b8f "Chaluvadi,S." . _:Nb8d4606544d847208cf75e7d2abd9b8f "Smole,S." . _:Nb8d4606544d847208cf75e7d2abd9b8f "Rosenberg,E." . _:Nb8d4606544d847208cf75e7d2abd9b8f "Slater,D." . _:Nb8d4606544d847208cf75e7d2abd9b8f "Branda,J." . _:N93deeea6c02f457f8c178c83ea42c13f "MT520375.1" . _:N53b49da76dd24d078856deabd2f85fa7 . _:Nb8d4606544d847208cf75e7d2abd9b8f "Gladden-Young,A." . _:Nb8d4606544d847208cf75e7d2abd9b8f "Neumann,A." . _:Nb8d4606544d847208cf75e7d2abd9b8f "Bauer,M." . _:Nb8d4606544d847208cf75e7d2abd9b8f "Park,D.J." . _:Nb8d4606544d847208cf75e7d2abd9b8f "Tomkins-Tinch,C." . _:N53b49da76dd24d078856deabd2f85fa7 . _:Nb8d4606544d847208cf75e7d2abd9b8f "Siddle,K.J." . _:Nb8d4606544d847208cf75e7d2abd9b8f "Loreth,C." . _:Ndeaa467c11684c6fa23d696818c7aea7 . _:Nb8d4606544d847208cf75e7d2abd9b8f "Chapman,S.B." . _:Nb8d4606544d847208cf75e7d2abd9b8f "Shaw,B." . _:Nb8d4606544d847208cf75e7d2abd9b8f "Birren,B.W." . _:Nb8d4606544d847208cf75e7d2abd9b8f "Cerrato,F." . "MT834203.1" . _:N67175c78c3344ffd923c08139d98402c "Sibley,T.R." . _:N67175c78c3344ffd923c08139d98402c "Rieder,M.J." . _:N67175c78c3344ffd923c08139d98402c "Lee,J." . _:N67175c78c3344ffd923c08139d98402c "Englund,J.A." . _:N67175c78c3344ffd923c08139d98402c "Lindquist,S." . _:N67175c78c3344ffd923c08139d98402c "Boeckh,M." . _:N67175c78c3344ffd923c08139d98402c "Han,P.D." . _:Nf301e652683d44b18eb59a4519a59ab0 . _:N67175c78c3344ffd923c08139d98402c "Starita,L.M." . _:N6903a7261bfd447a988f7c1285ce0c36 "https://github.com/seattleflu/assembly v. June-2020" . _:N67175c78c3344ffd923c08139d98402c "Wolf,C.R." . _:N67175c78c3344ffd923c08139d98402c "Chu,H.Y." . _:N1c8949be1cd346828f52d90ad28b9a05 . _:N67175c78c3344ffd923c08139d98402c "Thompson,M." . _:N1c8949be1cd346828f52d90ad28b9a05 "SARS-CoV-2/human/USA/WA-S1610/2020" . _:N67175c78c3344ffd923c08139d98402c "Richardson,M." . _:N67175c78c3344ffd923c08139d98402c "Fay,K." . _:N67175c78c3344ffd923c08139d98402c "Brandstetter,E." . _:N67175c78c3344ffd923c08139d98402c "Bedford,T." . _:N4719715d02f744f1898ea574c29f29a4 . _:N67175c78c3344ffd923c08139d98402c "University of Washington Medical Center" . _:N67175c78c3344ffd923c08139d98402c "Truong,M." . _:N4719715d02f744f1898ea574c29f29a4 . _:N67175c78c3344ffd923c08139d98402c "Hiatt,B." . _:N4719715d02f744f1898ea574c29f29a4 . _:N67175c78c3344ffd923c08139d98402c "Nickerson,D.A." . _:N67175c78c3344ffd923c08139d98402c "Ilcisin,M." . _:N67175c78c3344ffd923c08139d98402c "Dykema,P." . _:N6903a7261bfd447a988f7c1285ce0c36 . _:N67175c78c3344ffd923c08139d98402c "Lutz,B.R." . _:N67175c78c3344ffd923c08139d98402c "Shendure,J." . _:N67175c78c3344ffd923c08139d98402c "Seattle Flu Study, 1959 NE Pacific Street, Seattle, WA 98195, USA" . _:N4719715d02f744f1898ea574c29f29a4 "2020-05-26" . _:N67175c78c3344ffd923c08139d98402c "Frazar,C.D." . _:N4719715d02f744f1898ea574c29f29a4 "MT834203.1" . _:N67175c78c3344ffd923c08139d98402c . _:N67175c78c3344ffd923c08139d98402c "Pelle,B." . _:N1c8949be1cd346828f52d90ad28b9a05 . _:N67175c78c3344ffd923c08139d98402c "Adler,A." . _:N67175c78c3344ffd923c08139d98402c "Melly,G." . _:N4719715d02f744f1898ea574c29f29a4 . _:N6903a7261bfd447a988f7c1285ce0c36 . _:Nf301e652683d44b18eb59a4519a59ab0 . _:N67175c78c3344ffd923c08139d98402c "Famulare,M." . _:N67175c78c3344ffd923c08139d98402c "Lacombe,K." . _:N67175c78c3344ffd923c08139d98402c "Gautom,R." . "MT873354.1" . _:N868730c182184cfbbdaededd4fb0676c "Chaluvadi,S." . _:N868730c182184cfbbdaededd4fb0676c "Lagerborg,K." . _:N868730c182184cfbbdaededd4fb0676c "Sabeti,P.C." . _:N868730c182184cfbbdaededd4fb0676c "Gladden-Young,A." . _:N868730c182184cfbbdaededd4fb0676c "Ryan,E." . _:N868730c182184cfbbdaededd4fb0676c "Lemieux,J.E." . _:N868730c182184cfbbdaededd4fb0676c "Carter,A." . _:N868730c182184cfbbdaededd4fb0676c "Anahtar,M." . _:N868730c182184cfbbdaededd4fb0676c "Birren,B.W." . _:N868730c182184cfbbdaededd4fb0676c "Smole,S." . _:N868730c182184cfbbdaededd4fb0676c "Chapman,S.B." . _:N868730c182184cfbbdaededd4fb0676c "Park,D.J." . _:N215d39a15fa041c6babd1fec8ff4b83d "9.318195499"^^ . _:N7ca5e3085d8f447eba99a6dad1620b1f . _:N868730c182184cfbbdaededd4fb0676c "Branda,J." . _:N868730c182184cfbbdaededd4fb0676c "Reilly,S." . _:N868730c182184cfbbdaededd4fb0676c "Neumann,A." . _:N215d39a15fa041c6babd1fec8ff4b83d "https://dockstore.org/workflows/github.com/broadinstitute/viral-pipelines/assemble_refbased:v2.0.21.1 v. 2.0.21.1" . _:N7ca5e3085d8f447eba99a6dad1620b1f "MT873354.1" . _:N7ca5e3085d8f447eba99a6dad1620b1f . _:N868730c182184cfbbdaededd4fb0676c "Gallagher,G." . _:N868730c182184cfbbdaededd4fb0676c "DeRuff,K." . _:N868730c182184cfbbdaededd4fb0676c "Pierce,V." . _:N868730c182184cfbbdaededd4fb0676c "Cusick,C." . _:Ncbd4170b1ba54a91b9f5a6daee79c537 . _:N868730c182184cfbbdaededd4fb0676c "Rudy,M." . _:N868730c182184cfbbdaededd4fb0676c "Siddle,K.J." . _:N868730c182184cfbbdaededd4fb0676c "Shaw,B." . _:N868730c182184cfbbdaededd4fb0676c . _:N5c4415b01f80407b8516e1e7cac96f26 . _:N868730c182184cfbbdaededd4fb0676c "MacInnis,B.L." . _:N868730c182184cfbbdaededd4fb0676c "Gnirke,A." . _:N868730c182184cfbbdaededd4fb0676c "Adams,G." . _:N868730c182184cfbbdaededd4fb0676c "Lin,A.E." . _:N868730c182184cfbbdaededd4fb0676c "Flowers,K." . _:Ncbd4170b1ba54a91b9f5a6daee79c537 . _:N5c4415b01f80407b8516e1e7cac96f26 . _:N868730c182184cfbbdaededd4fb0676c "Turbett,S." . _:N868730c182184cfbbdaededd4fb0676c "Slater,D." . _:N868730c182184cfbbdaededd4fb0676c "Normandin,E." . _:N868730c182184cfbbdaededd4fb0676c "Loreth,C." . _:N7ca5e3085d8f447eba99a6dad1620b1f . _:N868730c182184cfbbdaededd4fb0676c "LaRocque,R." . _:N7ca5e3085d8f447eba99a6dad1620b1f . _:N868730c182184cfbbdaededd4fb0676c "Rosenberg,E." . _:N215d39a15fa041c6babd1fec8ff4b83d . _:N868730c182184cfbbdaededd4fb0676c "Bauer,M." . _:N7ca5e3085d8f447eba99a6dad1620b1f "Massachusetts General Hospital" . _:N215d39a15fa041c6babd1fec8ff4b83d . _:N868730c182184cfbbdaededd4fb0676c "Harris,J." . _:N868730c182184cfbbdaededd4fb0676c "Tomkins-Tinch,C." . _:N7ca5e3085d8f447eba99a6dad1620b1f "2020-05-06" . _:Ncbd4170b1ba54a91b9f5a6daee79c537 "SARS-CoV-2/human/USA/MA-MGH-01350/2020" . _:N868730c182184cfbbdaededd4fb0676c "Cerrato,F." . "MT627612.1" . _:N787ec3cdaa3b44b6addfaa48ae5daf3a "minimap2 v. 2.17; ivar v. 1.2" . _:Nd681a18c1195435099116d1af9dabdf7 . _:N2727940c175940c08b7517e80b0fa243 "CZB Cliahub Consortium,C.C.C." . _:N2727940c175940c08b7517e80b0fa243 "Department of Medicine, CZ Biohub, UCSF, 499 Illinois St, San Francisco, CA 94158, USA" . _:N2727940c175940c08b7517e80b0fa243 . _:N4637f935f12042ac8c6d3907e9efed7c . _:N30bfac2ceb1441b1a6b71e2641418a40 . _:N4637f935f12042ac8c6d3907e9efed7c . _:N787ec3cdaa3b44b6addfaa48ae5daf3a . _:N787ec3cdaa3b44b6addfaa48ae5daf3a . _:N4637f935f12042ac8c6d3907e9efed7c "2020-04-23" . _:N30bfac2ceb1441b1a6b71e2641418a40 . _:N4637f935f12042ac8c6d3907e9efed7c . _:N4637f935f12042ac8c6d3907e9efed7c . _:N2727940c175940c08b7517e80b0fa243 "Division of Infectious Diseases" . _:Nd681a18c1195435099116d1af9dabdf7 "SARS-CoV-2/human/USA/CA-CZB-1460/2020" . _:N4637f935f12042ac8c6d3907e9efed7c . _:Nd681a18c1195435099116d1af9dabdf7 . _:N4637f935f12042ac8c6d3907e9efed7c "MT628156.1" . "MT520277.1" . _:N2042255bad04445da6a2c046db7843fc "Carter,A." . _:N2042255bad04445da6a2c046db7843fc "DeRuff,K." . _:N2042255bad04445da6a2c046db7843fc "Park,D.J." . _:N936bc91693054df99461a626485ffeb7 . _:N2042255bad04445da6a2c046db7843fc "Normandin,E." . _:N2042255bad04445da6a2c046db7843fc "Tomkins-Tinch,C." . _:Nbe000a81accb47a7b16c922b4f26a312 . _:N2042255bad04445da6a2c046db7843fc "Loreth,C." . _:N2042255bad04445da6a2c046db7843fc "Chapman,S.B." . _:Nbe000a81accb47a7b16c922b4f26a312 "SARS-CoV-2/human/USA/MA_MGH_00076/2020" . _:N2042255bad04445da6a2c046db7843fc "Lagerborg,K." . _:N2042255bad04445da6a2c046db7843fc "LaRocque,R." . _:N2042255bad04445da6a2c046db7843fc "Cusick,C." . _:N2042255bad04445da6a2c046db7843fc "Ryan,E." . _:N2042255bad04445da6a2c046db7843fc "Smole,S." . _:Nff7e3d3c5c3248dd9ce623ad36fa61e1 . _:N2042255bad04445da6a2c046db7843fc "Gladden-Young,A." . _:N2042255bad04445da6a2c046db7843fc "Branda,J." . _:N2042255bad04445da6a2c046db7843fc "Lemieux,J.E." . _:N2042255bad04445da6a2c046db7843fc "Neumann,A." . _:Nbe000a81accb47a7b16c922b4f26a312 . _:N2042255bad04445da6a2c046db7843fc "Bauer,M." . _:N936bc91693054df99461a626485ffeb7 . _:N2042255bad04445da6a2c046db7843fc . _:N936bc91693054df99461a626485ffeb7 "2020-03-25" . _:N936bc91693054df99461a626485ffeb7 "Massachusetts General Hospital" . _:N2042255bad04445da6a2c046db7843fc "Reilly,S." . _:Nada0159aa4a741c0a91818e2e2e5267b "https://github.com/broadinstitute/viral-pipelines/blob/master/pipes/WDL/workflows/assemble_refbased.wdl v. 2.0.21.5-rc6" . _:N2042255bad04445da6a2c046db7843fc "Turbett,S." . _:N2042255bad04445da6a2c046db7843fc "Harris,J." . _:N2042255bad04445da6a2c046db7843fc "Rosenberg,E." . _:N2042255bad04445da6a2c046db7843fc "Birren,B.W." . _:Nada0159aa4a741c0a91818e2e2e5267b "11117.64578"^^ . _:Nada0159aa4a741c0a91818e2e2e5267b . _:N936bc91693054df99461a626485ffeb7 . _:N2042255bad04445da6a2c046db7843fc "Lin,A.E." . _:N2042255bad04445da6a2c046db7843fc "Chaluvadi,S." . _:N2042255bad04445da6a2c046db7843fc "Siddle,K.J." . _:N936bc91693054df99461a626485ffeb7 "MT520277.1" . _:N2042255bad04445da6a2c046db7843fc "Gallagher,G." . _:N2042255bad04445da6a2c046db7843fc "Pierce,V." . _:Nff7e3d3c5c3248dd9ce623ad36fa61e1 . _:N2042255bad04445da6a2c046db7843fc "Adams,G." . _:N2042255bad04445da6a2c046db7843fc "Shaw,B." . _:N2042255bad04445da6a2c046db7843fc "Sabeti,P.C." . _:N2042255bad04445da6a2c046db7843fc "Gnirke,A." . _:N2042255bad04445da6a2c046db7843fc "Rudy,M." . _:N936bc91693054df99461a626485ffeb7 . _:N2042255bad04445da6a2c046db7843fc "MacInnis,B.L." . _:N2042255bad04445da6a2c046db7843fc "Anahtar,M." . _:N2042255bad04445da6a2c046db7843fc "Slater,D." . _:Nada0159aa4a741c0a91818e2e2e5267b . _:N2042255bad04445da6a2c046db7843fc "Cerrato,F." . _:N2042255bad04445da6a2c046db7843fc "Flowers,K." . "SRR11597148" . _:N63a04e659649498d88205fbe6bca27c6 "SH0072" . _:N711f2cee6b39421688e54d3cb0602641 . _:N711f2cee6b39421688e54d3cb0602641 "2. National Research Center for Translational Medi" . _:N711f2cee6b39421688e54d3cb0602641 "2. National Research Center for Translational Medicine (Shanghai); Ruijin Hospital Affiliated to Shanghai Jiao Tong University School of Medicine; 197 RuiJin Er Rd; Shanghai; China; Postal code 200025" . _:N26411c3735c0472ba4cc766f993f1ddc "2020-02-01" . _:N26411c3735c0472ba4cc766f993f1ddc . _:N26411c3735c0472ba4cc766f993f1ddc . _:N711f2cee6b39421688e54d3cb0602641 "SRA1068259" . _:N711f2cee6b39421688e54d3cb0602641 "YUN TAN" . _:N013bef3b660b4299a57c6e3131f83edb . _:N26411c3735c0472ba4cc766f993f1ddc "Shanghai Public Health Clinical Center, Fudan University, Shanghai, China" . _:N63a04e659649498d88205fbe6bca27c6 . _:N63a04e659649498d88205fbe6bca27c6 . _:N26411c3735c0472ba4cc766f993f1ddc . _:N013bef3b660b4299a57c6e3131f83edb . _:Nd0ee4a4ea9c145cfaa0650acd608bfd8 . _:N711f2cee6b39421688e54d3cb0602641 "PRJNA627662" . _:Nd0ee4a4ea9c145cfaa0650acd608bfd8 "LIBRARY_STRATEGY: AMPLICON;" . _:N711f2cee6b39421688e54d3cb0602641 "steventan@sjtu.edu.cn" . _:N711f2cee6b39421688e54d3cb0602641 "Ruijin Hospital Affiliated to Shanghai Jiao Tong University School of Medicine" . _:Nd0ee4a4ea9c145cfaa0650acd608bfd8 . _:N711f2cee6b39421688e54d3cb0602641 "2. National Research Center for Translational Medicine (Shanghai); Ruijin Hospital Affiliated to Shanghai Jiao Tong University School of Medicine; 197 RuiJin Er Rd; Shanghai; China; Postal code 200025" . _:N26411c3735c0472ba4cc766f993f1ddc "SRR11597148" . "MT449640.1" . _:N6be8f10192f847bf835e802ba3427b0c "CZB Cliahub Consortium,C.C.C." . _:Ndcf460ebe64846ff952dd84645532892 . _:N682fbcceebbb43b4b2d0172f76dcf06c "SARS-CoV-2/human/USA/CA-CZB-1047/2020" . _:Ndcf460ebe64846ff952dd84645532892 "minimap2 v. 2.17; ivar v. 1.2" . _:N3215b52ff3944ded9605ffcc506c3892 . _:N3215b52ff3944ded9605ffcc506c3892 . _:N3215b52ff3944ded9605ffcc506c3892 . _:N682fbcceebbb43b4b2d0172f76dcf06c . _:N6be8f10192f847bf835e802ba3427b0c "Chan-Zuckerberg Biohub, 499 Illinois St, San Francisco, CA 94158, USA" . _:N3215b52ff3944ded9605ffcc506c3892 "2020-04-03" . _:N682fbcceebbb43b4b2d0172f76dcf06c . _:N3215b52ff3944ded9605ffcc506c3892 . _:N6be8f10192f847bf835e802ba3427b0c "Data Science" . _:N3215b52ff3944ded9605ffcc506c3892 . _:N3215b52ff3944ded9605ffcc506c3892 "MT449640.1" . _:Ne05f1f42aa60427ebb2b660dd186df5f . _:N6be8f10192f847bf835e802ba3427b0c . _:Ne05f1f42aa60427ebb2b660dd186df5f . _:Ndcf460ebe64846ff952dd84645532892 . "SRR11953676" . _:N653ebb150e034144ad833851ffc162af "Christine Loreth" . _:N4dd975552ef3489dae56e8ebad9c91b5 . _:N653ebb150e034144ad833851ffc162af "Broad Institute of Harvard and MIT" . _:N653ebb150e034144ad833851ffc162af "PRJNA622837" . _:N653ebb150e034144ad833851ffc162af "Infectious Disease Program; Broad Institute of Harvard and MIT; 75 Ames St; Cambridge; Massachusetts; USA; Postal code 02142" . _:N0ad24ff5428948dc81be8a553cef3c04 . _:N653ebb150e034144ad833851ffc162af "" . _:N0acf419b4c2941cd9940a23b711b34c0 . _:Nccfac8355d874335a6ca3973ae881a9e "LIBRARY_STRATEGY: RNA-Seq;" . _:Nccfac8355d874335a6ca3973ae881a9e . _:N653ebb150e034144ad833851ffc162af "SRA1084625" . _:N653ebb150e034144ad833851ffc162af . _:N4dd975552ef3489dae56e8ebad9c91b5 "Massachusetts General Hospital" . _:N0ad24ff5428948dc81be8a553cef3c04 "SARS-CoV-2/human/USA/MA_MGH_00005/2020" . _:N4dd975552ef3489dae56e8ebad9c91b5 . _:N0ad24ff5428948dc81be8a553cef3c04 . _:N653ebb150e034144ad833851ffc162af "Infectious Disease Program; Broad Institute of Harvard and MIT; 75 Ames St; Cambridge; Massachusetts; USA; Postal code 02142" . _:N4dd975552ef3489dae56e8ebad9c91b5 "2020-03-11" . _:N0acf419b4c2941cd9940a23b711b34c0 . _:N4dd975552ef3489dae56e8ebad9c91b5 . _:Nccfac8355d874335a6ca3973ae881a9e . _:N4dd975552ef3489dae56e8ebad9c91b5 "SRR11953676" . _:N653ebb150e034144ad833851ffc162af "cloreth@broadinstitute.org" . "MT641699.1" . _:Ndc58271c17b546f58e8637fc179588a2 "Hopkins,M." . _:N76f2b841ffc74e14b7e29ebee84fd390 . _:N76f2b841ffc74e14b7e29ebee84fd390 . _:Neb5f8f7db6544909bc4056fa49de3017 . _:N76f2b841ffc74e14b7e29ebee84fd390 "2020-03-11" . _:Ndc58271c17b546f58e8637fc179588a2 "Thielen,P.M." . _:Ndc58271c17b546f58e8637fc179588a2 "Infectious Disease" . _:Ndc58271c17b546f58e8637fc179588a2 "Ernlund,A." . _:Ndc58271c17b546f58e8637fc179588a2 "Zudock,K." . _:Ndc58271c17b546f58e8637fc179588a2 "JHU SARS-CoV-2 Genome Sequencing, 3400 N. Charles St., Baltimore, MD 21218, USA" . _:Ndc58271c17b546f58e8637fc179588a2 "Kirsche,M." . _:N76f2b841ffc74e14b7e29ebee84fd390 . _:N76f2b841ffc74e14b7e29ebee84fd390 . _:Nc079caf2898249ad8bf7460fb019ddf3 "SARS-CoV-2/human/USA/MD-HP00057/2020" . _:N8a7afd8727a64fd5a5dee9e5d62d7cf1 . _:Ndc58271c17b546f58e8637fc179588a2 "Wohl,S." . _:Ndc58271c17b546f58e8637fc179588a2 "Sadowski,N." . _:Ndc58271c17b546f58e8637fc179588a2 "Timp,W." . _:Ndc58271c17b546f58e8637fc179588a2 "Mehoke,T." . _:Ndc58271c17b546f58e8637fc179588a2 "Howser,C." . _:N8a7afd8727a64fd5a5dee9e5d62d7cf1 . _:Ndc58271c17b546f58e8637fc179588a2 . _:Ndc58271c17b546f58e8637fc179588a2 "Ray,S.C." . _:Nc079caf2898249ad8bf7460fb019ddf3 . _:Ndc58271c17b546f58e8637fc179588a2 "Fan,Y." . _:Ndc58271c17b546f58e8637fc179588a2 "Falade-Nwulia,O." . _:Ndc58271c17b546f58e8637fc179588a2 "Morris,P." . _:Ndc58271c17b546f58e8637fc179588a2 "Gniazdowski,V." . _:N76f2b841ffc74e14b7e29ebee84fd390 "MT646071.1" . _:Ndc58271c17b546f58e8637fc179588a2 "Mostafa,H.H." . _:Ndc58271c17b546f58e8637fc179588a2 "Schatz,M.C." . _:Nc079caf2898249ad8bf7460fb019ddf3 . _:Neb5f8f7db6544909bc4056fa49de3017 . _:Neb5f8f7db6544909bc4056fa49de3017 "ARTIC v. 1" . _:Ndc58271c17b546f58e8637fc179588a2 "Ramakrishnan,S." . "MT810526.1" . _:Nd9b8a3af0b8042b69e507fc08ef53fd3 . _:Nf480136aa87e4ed597b1e2d4cf44b402 "Department of Immunology" . _:Nd9b8a3af0b8042b69e507fc08ef53fd3 . _:N8797fd2b7ef741f9b1384c48a4386f75 . _:Nd9b8a3af0b8042b69e507fc08ef53fd3 . _:Nf480136aa87e4ed597b1e2d4cf44b402 "Basler,T." . _:Nf480136aa87e4ed597b1e2d4cf44b402 "Shephard,J." . _:N506b48b97563454a962dbcf69eb93572 . _:Nf480136aa87e4ed597b1e2d4cf44b402 "Austin,B." . _:N506b48b97563454a962dbcf69eb93572 . _:Nf480136aa87e4ed597b1e2d4cf44b402 "SEARCH Alliance,S.D." . _:Nd9b8a3af0b8042b69e507fc08ef53fd3 . _:Nd9b8a3af0b8042b69e507fc08ef53fd3 "MT810526.1" . _:N8797fd2b7ef741f9b1384c48a4386f75 . _:Nfb3cb971f8a54be8926f320b213595f6 . _:Nfb3cb971f8a54be8926f320b213595f6 . _:N8797fd2b7ef741f9b1384c48a4386f75 "iVar v. 1.2.2" . _:Nf480136aa87e4ed597b1e2d4cf44b402 . _:N506b48b97563454a962dbcf69eb93572 "SARS-CoV-2/human/USA/SEARCH-1660-SAN/2020" . _:Nf480136aa87e4ed597b1e2d4cf44b402 "The Scripps Research Institute, 10550 N Torrey Pines Rd, San Diego, CA 92122, USA" . _:Nd9b8a3af0b8042b69e507fc08ef53fd3 "2020-03-20" . "SRR11621921" . _:N78282f01ddb34c44834c6cc955b97e76 "LIBRARY_STRATEGY: RNA-Seq;" . _:N6965c1618bf14925b9e241f2ed65ef8a . _:N6965c1618bf14925b9e241f2ed65ef8a "Laboratory Medicine" . _:N6965c1618bf14925b9e241f2ed65ef8a "PRJNA610428" . _:N115440e6f05443cc9cd827c6ef557167 . _:N80762c50883d408c8d311dd0fe8c9f95 . _:N6965c1618bf14925b9e241f2ed65ef8a "Laboratory Medicine; University of Washington; 1100 Fairview Avenue North, E5-110; Seattle; WA; USA; Postal code 98109" . _:N6965c1618bf14925b9e241f2ed65ef8a "Pavitra Roychoudhury" . _:N6965c1618bf14925b9e241f2ed65ef8a "proychou@uw.edu" . _:Nf56d8ec310004a72b04e213a4a118a4c . _:N6965c1618bf14925b9e241f2ed65ef8a "SRA1069823" . _:N6965c1618bf14925b9e241f2ed65ef8a "Laboratory Medicine; University of Washington; 1100 Fairview Avenue North, E5-110; Seattle; WA; USA; Postal code 98109" . _:N80762c50883d408c8d311dd0fe8c9f95 "University of Washington Virology Lab" . _:Nf56d8ec310004a72b04e213a4a118a4c . _:N115440e6f05443cc9cd827c6ef557167 . _:N78282f01ddb34c44834c6cc955b97e76 . _:N6965c1618bf14925b9e241f2ed65ef8a "University of Washington" . _:N80762c50883d408c8d311dd0fe8c9f95 "SRR11621921" . _:N78282f01ddb34c44834c6cc955b97e76 . _:N80762c50883d408c8d311dd0fe8c9f95 "1970-01-01" . _:N80762c50883d408c8d311dd0fe8c9f95 . _:N80762c50883d408c8d311dd0fe8c9f95 "The real 'collection_date' is missing" . "MT704072.1" . _:N84b5dae103b04e56bf6965c11f5f4d1a . _:Nbd2efdc049164a36b31ac68da3f85068 . _:N129204a46bf04761a6169d08382b5777 "SARS-CoV-2/human/USA/FL-BPHL-0254/2020" . _:N6619e127a8a148c0ad660c55bc356782 . _:Nbd2efdc049164a36b31ac68da3f85068 . _:Nbd2efdc049164a36b31ac68da3f85068 "MT704072.1" . _:Nea400043d6694950943506952c977b37 "Schmedes,S." . _:Nea400043d6694950943506952c977b37 "FLDOH, 1217 N Pearl St, Jacksonville, FL 32202, USA" . _:Nbd2efdc049164a36b31ac68da3f85068 . _:Nbd2efdc049164a36b31ac68da3f85068 "2020-05-05" . _:N129204a46bf04761a6169d08382b5777 . _:N84b5dae103b04e56bf6965c11f5f4d1a . _:N6619e127a8a148c0ad660c55bc356782 . _:N129204a46bf04761a6169d08382b5777 . _:Nea400043d6694950943506952c977b37 . _:Nea400043d6694950943506952c977b37 "Blanton,J." . _:Nea400043d6694950943506952c977b37 "BPHL" . _:N84b5dae103b04e56bf6965c11f5f4d1a "bwa v. 0.7.17; ivar v. 1.2.2" . "SRR11772025" . _:Nd84405d672c94967a4741c8e0a3e6ccb "Laboratory Medicine; University of Washington; 1100 Fairview Avenue North, E5-110; Seattle; WA; USA; Postal code 98109" . _:N85c931965e2d44e19781dd9bc94b1a9a "LIBRARY_STRATEGY: RNA-Seq;" . _:Nb8478dcab68f4c75afb489bc878ba5a3 . _:Ndca28e4a4f9b4a4ba7286a69a2c3a7d3 . _:Nad937e1661384c3fb3e8b0ef8856ddc1 "1970-01-01" . _:Nad937e1661384c3fb3e8b0ef8856ddc1 . _:Nb8478dcab68f4c75afb489bc878ba5a3 . _:Nd84405d672c94967a4741c8e0a3e6ccb "PRJNA610428" . _:Ndca28e4a4f9b4a4ba7286a69a2c3a7d3 . _:N85c931965e2d44e19781dd9bc94b1a9a . _:Nad937e1661384c3fb3e8b0ef8856ddc1 . _:Nd84405d672c94967a4741c8e0a3e6ccb "SRA1074213" . _:Nd84405d672c94967a4741c8e0a3e6ccb "Laboratory Medicine; University of Washington; 1100 Fairview Avenue North, E5-110; Seattle; WA; USA; Postal code 98109" . _:Nd84405d672c94967a4741c8e0a3e6ccb "proychou@uw.edu" . _:Nd84405d672c94967a4741c8e0a3e6ccb "University of Washington" . _:Nd84405d672c94967a4741c8e0a3e6ccb . _:Nad937e1661384c3fb3e8b0ef8856ddc1 "SRR11772025" . _:Nad937e1661384c3fb3e8b0ef8856ddc1 "The real 'collection_date' is missing" . _:N85c931965e2d44e19781dd9bc94b1a9a . _:Nd84405d672c94967a4741c8e0a3e6ccb "Laboratory Medicine" . _:Nad937e1661384c3fb3e8b0ef8856ddc1 "University of Washington Virology Lab" . _:Nd84405d672c94967a4741c8e0a3e6ccb "Pavitra Roychoudhury" . "MT539174.1" . _:N7082869fac004531b39fdc539c1aacbd . _:Nc8c5dda24b1f45c2b92b56713793f28c "Dutta,J." . _:N14664cb26d6546f394d50c5b954b20dc . _:Nc8c5dda24b1f45c2b92b56713793f28c "Aberg,J." . _:Nc8c5dda24b1f45c2b92b56713793f28c "Miorin,L." . _:Nc8c5dda24b1f45c2b92b56713793f28c "Liu,W." . _:Nc8c5dda24b1f45c2b92b56713793f28c . _:Nc8c5dda24b1f45c2b92b56713793f28c "Patel,G." . _:Nc8c5dda24b1f45c2b92b56713793f28c "Albuquerque,B." . _:Nc8c5dda24b1f45c2b92b56713793f28c "Polanco,J." . _:Na15c48819c844a13a4de2aba25f52898 . _:N7082869fac004531b39fdc539c1aacbd "Minimap2, Pilon v. 2.17-r941, v.1.23" . _:N2e2373e98a7b4b0da71ce842d4602649 "SARS-CoV-2/human/USA/NY-PV09125/2020" . _:Nc8c5dda24b1f45c2b92b56713793f28c "Albrecht,R." . _:Na15c48819c844a13a4de2aba25f52898 . _:Nc8c5dda24b1f45c2b92b56713793f28c "Wang,Y.C." . _:Nc8c5dda24b1f45c2b92b56713793f28c "Sordillo,E." . _:Na15c48819c844a13a4de2aba25f52898 "passage_history: sequence was derived directly from the original sample material" . _:Nc8c5dda24b1f45c2b92b56713793f28c "Smith,M." . _:Nc8c5dda24b1f45c2b92b56713793f28c "Simon,V." . _:Nc8c5dda24b1f45c2b92b56713793f28c "Fabre,S." . _:Na15c48819c844a13a4de2aba25f52898 . _:N2e2373e98a7b4b0da71ce842d4602649 . _:Nc8c5dda24b1f45c2b92b56713793f28c "Gitman,M." . _:Na15c48819c844a13a4de2aba25f52898 . _:Nc8c5dda24b1f45c2b92b56713793f28c "Gonzalez-Reiche,A.S." . _:Nc8c5dda24b1f45c2b92b56713793f28c "Krammer,F." . _:Na15c48819c844a13a4de2aba25f52898 "MT370993.1" . _:Nc8c5dda24b1f45c2b92b56713793f28c "Khan,Z." . _:Nc8c5dda24b1f45c2b92b56713793f28c "Paniz-Mondolfi,A." . _:Nc8c5dda24b1f45c2b92b56713793f28c "Hernandez,M." . _:Nc8c5dda24b1f45c2b92b56713793f28c "Sullivan,M." . _:Nc8c5dda24b1f45c2b92b56713793f28c "Soto,J." . _:N2e2373e98a7b4b0da71ce842d4602649 . _:Nc8c5dda24b1f45c2b92b56713793f28c "Obla,A." . _:Nc8c5dda24b1f45c2b92b56713793f28c "Garcia-Sastre,A." . _:Nc8c5dda24b1f45c2b92b56713793f28c "Sebra,R." . _:N14664cb26d6546f394d50c5b954b20dc . _:Na15c48819c844a13a4de2aba25f52898 "2020-03-19" . _:N7082869fac004531b39fdc539c1aacbd . _:Nc8c5dda24b1f45c2b92b56713793f28c "Sridhar,S.H." . _:Nc8c5dda24b1f45c2b92b56713793f28c "van Bakel,H." . "MT499185.1" . _:N5b5a5f51ed654411a02bdf880f1596ea "Department of Medicine, CZ Biohub, UCSF, 499 Illinois St, San Francisco, CA 94158, USA" . _:N5b5a5f51ed654411a02bdf880f1596ea "Division of Infectious Diseases" . _:Nfbfe9a455c6b4dd29a46d402bec5a7f9 "minimap2 v. 2.17; ivar v. 1.2" . _:N2bffff418b724e679abd467f38ad4a2a . _:N5b5a5f51ed654411a02bdf880f1596ea "CZB Cliahub Consortium,C.C.C." . _:Nae04a508ffcc418d95f6812b60d14bbf . _:N2bffff418b724e679abd467f38ad4a2a . _:Nc9e4e6b92c4f43469d13e86f33beb053 . _:N5b5a5f51ed654411a02bdf880f1596ea "Gorzynski,J." . _:N5b5a5f51ed654411a02bdf880f1596ea "Bustamante,C." . _:N5b5a5f51ed654411a02bdf880f1596ea "Parikh,V.N." . _:N5b5a5f51ed654411a02bdf880f1596ea "Wheeler,M.T." . _:N5b5a5f51ed654411a02bdf880f1596ea "Andrews,J." . _:N5b5a5f51ed654411a02bdf880f1596ea "DeJong,H.N." . _:N5b5a5f51ed654411a02bdf880f1596ea "Pinksy,B." . _:N5b5a5f51ed654411a02bdf880f1596ea "Ashley,E." . _:N5b5a5f51ed654411a02bdf880f1596ea . _:N5b5a5f51ed654411a02bdf880f1596ea "Rivas,M." . _:Nc9e4e6b92c4f43469d13e86f33beb053 . _:Nc9e4e6b92c4f43469d13e86f33beb053 "SARS-CoV-2/human/USA/CA-CZB-1210/2020" . _:Nfbfe9a455c6b4dd29a46d402bec5a7f9 . _:N2bffff418b724e679abd467f38ad4a2a . _:Nfbfe9a455c6b4dd29a46d402bec5a7f9 . _:N2bffff418b724e679abd467f38ad4a2a . _:N2bffff418b724e679abd467f38ad4a2a "2020-03-25" . _:N2bffff418b724e679abd467f38ad4a2a . _:N5b5a5f51ed654411a02bdf880f1596ea "Walter,K." . _:Nae04a508ffcc418d95f6812b60d14bbf . _:N2bffff418b724e679abd467f38ad4a2a "MT499185.1" . "MT810888.1" . _:Nf8f9b7cf3530400eb4b5d88b1f84fa0f . _:Nd4d7c83ebb8c42cfa0c29c3d0647fbcf "SARS-CoV-2/human/USA/SEARCH-1614-SAN/2020" . _:Nd4d7c83ebb8c42cfa0c29c3d0647fbcf . _:Nf8f9b7cf3530400eb4b5d88b1f84fa0f "Quigley,M." . _:Nf8f9b7cf3530400eb4b5d88b1f84fa0f "The Scripps Research Institute, 10550 N Torrey Pines Rd, San Diego, CA 92122, USA" . _:Ne96a2b76163c4be0af7e8d5afab0ae81 . _:Nf8f9b7cf3530400eb4b5d88b1f84fa0f "Department of Immunology" . _:Ne96a2b76163c4be0af7e8d5afab0ae81 . _:N4554fcf9a7a6469c8fab29ebc54a8f4b . _:N4554fcf9a7a6469c8fab29ebc54a8f4b "iVar v. 1.2.2" . _:Ne96a2b76163c4be0af7e8d5afab0ae81 . _:N4554fcf9a7a6469c8fab29ebc54a8f4b . _:Nf8f9b7cf3530400eb4b5d88b1f84fa0f "Mchardy,I." . _:Nf670eaf02d354330a3b1ade62e1586dd . _:Ne96a2b76163c4be0af7e8d5afab0ae81 "2020-05-19" . _:Nd4d7c83ebb8c42cfa0c29c3d0647fbcf . _:Nf8f9b7cf3530400eb4b5d88b1f84fa0f "Stefanski,E." . _:Nf8f9b7cf3530400eb4b5d88b1f84fa0f "SEARCH Alliance,S.D." . _:Ne96a2b76163c4be0af7e8d5afab0ae81 "MT810888.1" . _:Ne96a2b76163c4be0af7e8d5afab0ae81 . _:Nf670eaf02d354330a3b1ade62e1586dd . "MT252787.1" . _:Na640ccd8e4054c68855e6fba03f08860 "MT252787.1" . _:Nd529a7a32ae04afda3b94326fa3a42b7 . _:Na640ccd8e4054c68855e6fba03f08860 "2020-03-09" . _:Na640ccd8e4054c68855e6fba03f08860 . _:N8cec45867c9f4ec684f1091c8e4e3dae . _:Nd529a7a32ae04afda3b94326fa3a42b7 "Jerome,K." . _:Ncaf971481bbb4fdb9310e47517a76666 "SARS-CoV-2/human/USA/WA-UW64/2020" . _:Ne9d794983371406f8e1503496919a0d1 "custom pipeline v. 2020-03" . _:N8cec45867c9f4ec684f1091c8e4e3dae . _:Ncaf971481bbb4fdb9310e47517a76666 . _:Ne9d794983371406f8e1503496919a0d1 . _:Nd529a7a32ae04afda3b94326fa3a42b7 "Greninger,A." . _:Ne9d794983371406f8e1503496919a0d1 . _:Na640ccd8e4054c68855e6fba03f08860 . _:Ncaf971481bbb4fdb9310e47517a76666 . _:Nd529a7a32ae04afda3b94326fa3a42b7 "University of Washington, 1100 Fairview Ave N, PO Box 19024, E5-110, Seattle, WA 98109, USA" . _:Nd529a7a32ae04afda3b94326fa3a42b7 "Roychoudhury,P." . _:Nd529a7a32ae04afda3b94326fa3a42b7 "Laboratory Medicine" . _:Na640ccd8e4054c68855e6fba03f08860 . "MT482121.1" . _:N4555c24a6ef84963a801cd9ea908f46b . _:N461a0d45d0994adcad6d6af65194d032 . _:N3cdf7054883442eb93694096eacc979f "Division of Consolidated Laboratory Services, 600 N 5th Street, Richmond, VA 23219, USA" . _:N2de14448073348a0922a80f10311d025 . _:N461a0d45d0994adcad6d6af65194d032 "SARS-CoV-2/human/USA/VA-DCLS-0135/2020" . _:N5fa4f27a415c4f0abc1e799d604bdc99 "MT482121.1" . _:N3cdf7054883442eb93694096eacc979f "Department of General Services" . _:N5fa4f27a415c4f0abc1e799d604bdc99 . _:N3cdf7054883442eb93694096eacc979f . _:N5fa4f27a415c4f0abc1e799d604bdc99 . _:N5fa4f27a415c4f0abc1e799d604bdc99 "2020-04-15" . _:N3cdf7054883442eb93694096eacc979f "Fink,L." . _:N4555c24a6ef84963a801cd9ea908f46b "minimap2 v. 2.17; ivar v. 1.1" . _:N2de14448073348a0922a80f10311d025 . _:N461a0d45d0994adcad6d6af65194d032 . _:N4555c24a6ef84963a801cd9ea908f46b . _:N5fa4f27a415c4f0abc1e799d604bdc99 "The 'collection_date' is estimated (the original date was: 2020-04)" . _:N5fa4f27a415c4f0abc1e799d604bdc99 . "MT345837.1" . _:N4fb5d0604d534f2f990c60bcacb2afa5 . _:Ne87b893745514f05b6009ea7a4e709ee . _:N76a96e5d2bb7475f8e02cb53431eba67 "bwa v. 0.7.17-r1188; ivar v. 1.2" . _:Ne87b893745514f05b6009ea7a4e709ee . _:N4de50d1f15c1477c81d0c259343ac9d2 "Young,E." . _:N4de50d1f15c1477c81d0c259343ac9d2 "Department of Health" . _:N4de50d1f15c1477c81d0c259343ac9d2 "Utah Public Health Laboratory, 4431 2700 W, SLC, UT 84129, USA" . _:N4de50d1f15c1477c81d0c259343ac9d2 "Oakeson,K." . _:N1a98befbe89747dca7f32354912577a2 . _:Ne87b893745514f05b6009ea7a4e709ee . _:Ne87b893745514f05b6009ea7a4e709ee "2020-03-05" . _:N4fb5d0604d534f2f990c60bcacb2afa5 . _:N4de50d1f15c1477c81d0c259343ac9d2 . _:N1a98befbe89747dca7f32354912577a2 . _:N1a98befbe89747dca7f32354912577a2 "SARS-CoV-2/human/USA/UT-00004/2020" . _:Ne87b893745514f05b6009ea7a4e709ee "MT334524.1" . _:N76a96e5d2bb7475f8e02cb53431eba67 . _:N76a96e5d2bb7475f8e02cb53431eba67 . "MT325591.1" . _:Nd108d8cd874a4cc0be7341493e78ed20 . _:N8cb801bcb284464f8485e82d208c873c . _:Nd108d8cd874a4cc0be7341493e78ed20 "Keckler,M.S." . _:Nd108d8cd874a4cc0be7341493e78ed20 "Division of Viral Diseases" . _:Nfdbf4af74a044c37ad0aac88f5aa19ed . _:Nc106f102cec547f499f26fb586b7cef7 "MT325591.1" . _:Ndd09b50f566040b39d30e838b0b0ea11 . _:Nd108d8cd874a4cc0be7341493e78ed20 "Li,Y." . _:Nd108d8cd874a4cc0be7341493e78ed20 "Laufer Halpin,A.S." . _:Nd108d8cd874a4cc0be7341493e78ed20 "Tong,S." . _:Nc106f102cec547f499f26fb586b7cef7 . _:Nc106f102cec547f499f26fb586b7cef7 . _:Ndd09b50f566040b39d30e838b0b0ea11 "bcftools v. 1.9; bowtie2 v. 2.3.3.1" . _:Nd108d8cd874a4cc0be7341493e78ed20 "Queen,K." . _:N8cb801bcb284464f8485e82d208c873c . _:Nd108d8cd874a4cc0be7341493e78ed20 "Uehara,A." . _:Nd108d8cd874a4cc0be7341493e78ed20 "Elkins,C.A." . _:Nd108d8cd874a4cc0be7341493e78ed20 "Wang,H." . _:Nd108d8cd874a4cc0be7341493e78ed20 "Marine,R." . _:Nd108d8cd874a4cc0be7341493e78ed20 "Centers for Disease Control and Prevention, 1600 Clifton Rd NE, Atlanta, GA 30033, USA" . _:Nfdbf4af74a044c37ad0aac88f5aa19ed "SARS-CoV-2/human/USA/NC-CDC-6999/2020" . _:Nc106f102cec547f499f26fb586b7cef7 . _:Nc106f102cec547f499f26fb586b7cef7 . _:Ndd09b50f566040b39d30e838b0b0ea11 "100.0"^^ . _:Ndd09b50f566040b39d30e838b0b0ea11 . _:Nd108d8cd874a4cc0be7341493e78ed20 "Paden,C.R." . _:Nd108d8cd874a4cc0be7341493e78ed20 "Zhang,J." . _:Nd108d8cd874a4cc0be7341493e78ed20 "Tao,Y." . _:Nfdbf4af74a044c37ad0aac88f5aa19ed . _:Nc106f102cec547f499f26fb586b7cef7 "5' sequence is the primer sequence used" . _:Nc106f102cec547f499f26fb586b7cef7 "2020-03-06" . "MT451753.1" . _:Neb80bc8ee9d34f84bf69f6839abe365f "Sherry,N.L." . _:Neb80bc8ee9d34f84bf69f6839abe365f "Dougal,S." . _:N64fdf50e1d4b40b38d2040d62cd372ce . _:N67f5f964981e41f992577f7c5e39cd21 . _:Neb80bc8ee9d34f84bf69f6839abe365f "Seemann,T." . _:Neb80bc8ee9d34f84bf69f6839abe365f "Williamson,D.A." . _:N67f5f964981e41f992577f7c5e39cd21 "minimap2 v. 2.17-r941; samtools v. 1.10; ivar v. 1.2.1" . _:Neb80bc8ee9d34f84bf69f6839abe365f "Ballard,S.A." . _:Ne73f5d4c3bed4be99b5571e7f1d9faf7 . _:Neb80bc8ee9d34f84bf69f6839abe365f "Horan,K." . _:N64fdf50e1d4b40b38d2040d62cd372ce . _:Ne73f5d4c3bed4be99b5571e7f1d9faf7 . _:Neb80bc8ee9d34f84bf69f6839abe365f "van Diemen,A." . _:Neb80bc8ee9d34f84bf69f6839abe365f "Duchene,S." . _:N64fdf50e1d4b40b38d2040d62cd372ce "MT451753.1" . _:Neb80bc8ee9d34f84bf69f6839abe365f "Stinear,T.P." . _:Neb80bc8ee9d34f84bf69f6839abe365f "Caly,L." . _:Ne73f5d4c3bed4be99b5571e7f1d9faf7 "SARS-CoV-2/human/AUS/VIC1114/2020" . _:Neb80bc8ee9d34f84bf69f6839abe365f "Schultz,M.B." . _:N64fdf50e1d4b40b38d2040d62cd372ce "2020-04-07" . _:Neb80bc8ee9d34f84bf69f6839abe365f "Lane,C.R." . _:Neb80bc8ee9d34f84bf69f6839abe365f "Sutton,B." . _:N67f5f964981e41f992577f7c5e39cd21 . _:Neb80bc8ee9d34f84bf69f6839abe365f "Druce,J." . _:Nb5771b4031cf47fe8898c8e5bc2273bc . _:Neb80bc8ee9d34f84bf69f6839abe365f "Hoang,T." . _:Neb80bc8ee9d34f84bf69f6839abe365f "Sait,M." . _:Neb80bc8ee9d34f84bf69f6839abe365f "Goncalves da Silva,A." . _:Neb80bc8ee9d34f84bf69f6839abe365f "Alpren,C." . _:Nb5771b4031cf47fe8898c8e5bc2273bc . _:Neb80bc8ee9d34f84bf69f6839abe365f "Catton,M." . _:Neb80bc8ee9d34f84bf69f6839abe365f "Easton,M." . _:Neb80bc8ee9d34f84bf69f6839abe365f "Howden,B.P." . _:N67f5f964981e41f992577f7c5e39cd21 "3000.0"^^ . _:Neb80bc8ee9d34f84bf69f6839abe365f . _:N64fdf50e1d4b40b38d2040d62cd372ce . "MT632971.1" . _:N549f0f8c62dd4c978bbe0222e9963df5 "Department of Medicine, CZ Biohub, UCSF, 499 Illinois St, San Francisco, CA 94158, USA" . _:N432b906cb3414ea88e010f5a368c1afa . _:N432b906cb3414ea88e010f5a368c1afa . _:N549f0f8c62dd4c978bbe0222e9963df5 "CZB Cliahub Consortium,C.C.C." . _:Ne3ef9451dbb94d9bb7b493cce0d70171 "SARS-CoV-2/human/USA/CA-CZB-1600/2020" . _:N549f0f8c62dd4c978bbe0222e9963df5 "Division of Infectious Diseases" . _:Ne3ef9451dbb94d9bb7b493cce0d70171 . _:N549f0f8c62dd4c978bbe0222e9963df5 . _:N432b906cb3414ea88e010f5a368c1afa . _:N432b906cb3414ea88e010f5a368c1afa . _:N79adf3a8eb5e4005bf91cc2694f08f0c . _:N79adf3a8eb5e4005bf91cc2694f08f0c . _:N432b906cb3414ea88e010f5a368c1afa "MT628252.1" . _:N56cd0337e65b47d3aaa429b5ee3c913e . _:Ne3ef9451dbb94d9bb7b493cce0d70171 . _:N432b906cb3414ea88e010f5a368c1afa . _:N432b906cb3414ea88e010f5a368c1afa "2020-04-01" . _:N56cd0337e65b47d3aaa429b5ee3c913e . _:N79adf3a8eb5e4005bf91cc2694f08f0c "minimap2 v. 2.17; ivar v. 1.2" . "MT810827.1" . _:N67961bfb62e84b558845485483224ba7 "Department of Immunology" . _:Nff11d32003144ea5ae80c5bfc07c6d97 . _:N726e52b345504beeacd6d197164a40a9 . _:N67961bfb62e84b558845485483224ba7 "SEARCH Alliance,S.D." . _:N726e52b345504beeacd6d197164a40a9 . _:N726e52b345504beeacd6d197164a40a9 . _:Nff11d32003144ea5ae80c5bfc07c6d97 "SARS-CoV-2/human/USA/SEARCH-1448-SAN/2020" . _:N302f164d5abd400fb55f77f7bbf51dab . _:N14cb47f7b323483f8090036a3d711193 "iVar v. 1.2.2" . _:N67961bfb62e84b558845485483224ba7 "The Scripps Research Institute, 10550 N Torrey Pines Rd, San Diego, CA 92122, USA" . _:N67961bfb62e84b558845485483224ba7 "Quigley,M." . _:N726e52b345504beeacd6d197164a40a9 "MT810827.1" . _:N14cb47f7b323483f8090036a3d711193 . _:N302f164d5abd400fb55f77f7bbf51dab . _:N726e52b345504beeacd6d197164a40a9 "2020-03-26" . _:Nff11d32003144ea5ae80c5bfc07c6d97 . _:N726e52b345504beeacd6d197164a40a9 . _:N67961bfb62e84b558845485483224ba7 "Stefanski,E." . _:N14cb47f7b323483f8090036a3d711193 . _:N67961bfb62e84b558845485483224ba7 . _:N67961bfb62e84b558845485483224ba7 "Mchardy,I." . "MT612272.1" . _:N1c7f27da8376410aa569ee238aa6583b "Dolores de Jesus da Costa,M." . _:N1c7f27da8376410aa569ee238aa6583b "Ximenes,J." . _:N0c958e6633b14f28b74fb4550dd3f6b6 "MT612272.1" . _:N1c7f27da8376410aa569ee238aa6583b "Meumann,E." . _:N1c7f27da8376410aa569ee238aa6583b "Barreto,I." . _:N0c958e6633b14f28b74fb4550dd3f6b6 "Victorian Infectious Diseases Reference Laboratory (VIDRL)" . _:Nbd9aa740da8f46d1b43bb0b23593aa2c . _:N1c7f27da8376410aa569ee238aa6583b "Druce,J." . _:N0c958e6633b14f28b74fb4550dd3f6b6 . _:Nbd9aa740da8f46d1b43bb0b23593aa2c . _:Ncecca2c6388e48bfa9c23e4065e75acd . _:N423237c1703548ebb4a771edd947ed8a . _:N1c7f27da8376410aa569ee238aa6583b "Soares da Silva,E." . _:N1c7f27da8376410aa569ee238aa6583b "Canisia,D." . _:N1c7f27da8376410aa569ee238aa6583b "Caly,L." . _:N1c7f27da8376410aa569ee238aa6583b "Marr,I." . _:N1c7f27da8376410aa569ee238aa6583b "Jayanti Pereira Tilman,A." . _:N0c958e6633b14f28b74fb4550dd3f6b6 . _:N1c7f27da8376410aa569ee238aa6583b "Salles de Sousa,A." . _:N1c7f27da8376410aa569ee238aa6583b "Sait,M." . _:N1c7f27da8376410aa569ee238aa6583b "Sherry,N." . _:N1c7f27da8376410aa569ee238aa6583b "Antonia da Costa,E." . _:N1c7f27da8376410aa569ee238aa6583b "Douglas,N." . _:N1c7f27da8376410aa569ee238aa6583b "Wapling,J." . _:N0c958e6633b14f28b74fb4550dd3f6b6 "2020-05-17" . _:N423237c1703548ebb4a771edd947ed8a . _:N1c7f27da8376410aa569ee238aa6583b "Freeman,K." . _:N1c7f27da8376410aa569ee238aa6583b "Dakh,F." . _:N0c958e6633b14f28b74fb4550dd3f6b6 . _:Ncecca2c6388e48bfa9c23e4065e75acd . _:N1c7f27da8376410aa569ee238aa6583b . _:N1c7f27da8376410aa569ee238aa6583b "Francis,J." . _:Ncecca2c6388e48bfa9c23e4065e75acd "SARS-CoV-2/human/AUS/VIC1700/2020" . _:N1c7f27da8376410aa569ee238aa6583b "Schultz,M.B." . _:N1c7f27da8376410aa569ee238aa6583b "Seemann,T." . _:N1c7f27da8376410aa569ee238aa6583b "Baird,R." . _:N423237c1703548ebb4a771edd947ed8a "minimap2 v. 2.17; iVar v. 1.2.1; samtools v. 1.10" . "SRR11953850" . _:Nbe303c5d9cdf40b39b995c8676527a31 . _:Nbcd2ee93d8a0431f8a16832c022a833f . _:N46c4b1f723ae415695d7ffb9c6d0a7a5 "Infectious Disease Program; Broad Institute of Harvard and MIT; 75 Ames St; Cambridge; Massachusetts; USA; Postal code 02142" . _:N46c4b1f723ae415695d7ffb9c6d0a7a5 . _:N46c4b1f723ae415695d7ffb9c6d0a7a5 "SRA1084625" . _:N46c4b1f723ae415695d7ffb9c6d0a7a5 "" . _:Nbe303c5d9cdf40b39b995c8676527a31 "SRR11953850" . _:N46c4b1f723ae415695d7ffb9c6d0a7a5 "cloreth@broadinstitute.org" . _:N46c4b1f723ae415695d7ffb9c6d0a7a5 "Infectious Disease Program; Broad Institute of Harvard and MIT; 75 Ames St; Cambridge; Massachusetts; USA; Postal code 02142" . _:Nbe303c5d9cdf40b39b995c8676527a31 "Massachusetts General Hospital" . _:Nbcd2ee93d8a0431f8a16832c022a833f "LIBRARY_STRATEGY: RNA-Seq;" . _:Nbe303c5d9cdf40b39b995c8676527a31 . _:N46c4b1f723ae415695d7ffb9c6d0a7a5 "PRJNA622837" . _:N46c4b1f723ae415695d7ffb9c6d0a7a5 "Broad Institute of Harvard and MIT" . _:Nbe303c5d9cdf40b39b995c8676527a31 "2020-03-07" . _:N0eb6a2d2090f403184c7f0df587d3781 . _:N0eb6a2d2090f403184c7f0df587d3781 . _:N46c4b1f723ae415695d7ffb9c6d0a7a5 "Christine Loreth" . _:N42435b98b6dc44cd81da75d3fdc25a83 "SARS-CoV-2/human/USA/MA_MGH_00433/2020" . _:N42435b98b6dc44cd81da75d3fdc25a83 . _:N42435b98b6dc44cd81da75d3fdc25a83 . _:Nbe303c5d9cdf40b39b995c8676527a31 . _:Nbcd2ee93d8a0431f8a16832c022a833f . "MT295464.1" . _:N736fe805658f411689cd7e10c030530f . _:N814a3877bf7e488d925c600f4760e12b "Elbadry,M.A." . _:N7cb9c98245a841f89f808449e4ba6313 "CLC Genomic Workbench v. 10" . _:N31680becbd8848bba00a736374ab6510 . _:N7cb9c98245a841f89f808449e4ba6313 . _:N814a3877bf7e488d925c600f4760e12b "Gibson,J.C." . _:N736fe805658f411689cd7e10c030530f . _:N814a3877bf7e488d925c600f4760e12b "Morris,J.G. Jr." . _:N736fe805658f411689cd7e10c030530f "2020-03-10" . _:N7cb9c98245a841f89f808449e4ba6313 "1.169"^^ . _:Nc8eb014db2c242f5b1d0767a172c3b8f . _:N31680becbd8848bba00a736374ab6510 "SARS CoV-2/human/USA/UF-1/2020" . _:N814a3877bf7e488d925c600f4760e12b "Alam,M." . _:N31680becbd8848bba00a736374ab6510 . _:N736fe805658f411689cd7e10c030530f . _:N814a3877bf7e488d925c600f4760e12b "Waltzek,T.B." . _:N814a3877bf7e488d925c600f4760e12b . _:N814a3877bf7e488d925c600f4760e12b "Stephenson,C.J." . _:N814a3877bf7e488d925c600f4760e12b "Lednicky,J.A." . _:N814a3877bf7e488d925c600f4760e12b "Subramaniam,K." . _:N736fe805658f411689cd7e10c030530f "MT295464.1" . _:N7cb9c98245a841f89f808449e4ba6313 . _:Nc8eb014db2c242f5b1d0767a172c3b8f . _:N736fe805658f411689cd7e10c030530f . "MT666099.1" . _:N2fd6032e17e641fd99c6cc36f61b6f35 . _:N308e6a9b3ac94e99b583b9664c1d0413 . _:N551d6de1d4604fba8bc8625822fd3d30 "Habib,M.A." . _:N551d6de1d4604fba8bc8625822fd3d30 "Molla,M.M.A." . _:N2fd6032e17e641fd99c6cc36f61b6f35 "MT666099.1" . _:N551d6de1d4604fba8bc8625822fd3d30 "Sarkar,M.M.H." . _:N551d6de1d4604fba8bc8625822fd3d30 "Yeasmin,M." . _:N551d6de1d4604fba8bc8625822fd3d30 "Mohammad Mahmud,A.S." . _:N551d6de1d4604fba8bc8625822fd3d30 "Nafisa,T." . _:N551d6de1d4604fba8bc8625822fd3d30 "Al Din,S.M.S." . _:N2fd6032e17e641fd99c6cc36f61b6f35 . _:N551d6de1d4604fba8bc8625822fd3d30 "Hossain,M.S." . _:N551d6de1d4604fba8bc8625822fd3d30 "Ray,U.C." . _:N2fd6032e17e641fd99c6cc36f61b6f35 "2020-06-07" . _:N551d6de1d4604fba8bc8625822fd3d30 "Osman,E." . _:Nb95061fe96d942b4bde2616c679419a3 . _:N551d6de1d4604fba8bc8625822fd3d30 "Goswami,B." . _:N2fd6032e17e641fd99c6cc36f61b6f35 . _:N551d6de1d4604fba8bc8625822fd3d30 "Khan,M.S." . _:N8d2d5afdd3ef4f628f41fb94286ea01b . _:N551d6de1d4604fba8bc8625822fd3d30 "Sajib,S.A." . _:N551d6de1d4604fba8bc8625822fd3d30 "Ghosh,A.K." . _:N551d6de1d4604fba8bc8625822fd3d30 "Shamsuzzaman,A.K.M." . _:N308e6a9b3ac94e99b583b9664c1d0413 . _:N551d6de1d4604fba8bc8625822fd3d30 "Akter,S." . _:N2fd6032e17e641fd99c6cc36f61b6f35 . _:N551d6de1d4604fba8bc8625822fd3d30 "Akram,A." . _:N8d2d5afdd3ef4f628f41fb94286ea01b . _:Nb95061fe96d942b4bde2616c679419a3 . _:N551d6de1d4604fba8bc8625822fd3d30 . _:N551d6de1d4604fba8bc8625822fd3d30 "Jahan,I." . _:N551d6de1d4604fba8bc8625822fd3d30 "Banu,T.A." . _:N8d2d5afdd3ef4f628f41fb94286ea01b "DRAGEN RNA Pathogen Detection v. 3.5.13" . _:N551d6de1d4604fba8bc8625822fd3d30 "Uzzaman,M.S." . _:Nb95061fe96d942b4bde2616c679419a3 "SARS-CoV-2/human/BGD/BCSIR_NILMRC_115/2020" . "MT873313.1" . _:N5906b8e5809e4da88f882e6b4720be6f "Branda,J." . _:N5906b8e5809e4da88f882e6b4720be6f "Smole,S." . _:N5906b8e5809e4da88f882e6b4720be6f "Anahtar,M." . _:N02661acab05c4ddb80eb7823637b5fda . _:N5906b8e5809e4da88f882e6b4720be6f "Gladden-Young,A." . _:N9f5ae5cd1fb2466690374bdc4b076ce8 "Massachusetts Department of Public Health" . _:N5906b8e5809e4da88f882e6b4720be6f "Birren,B.W." . _:N5906b8e5809e4da88f882e6b4720be6f "MacInnis,B.L." . _:N9f5ae5cd1fb2466690374bdc4b076ce8 . _:N5906b8e5809e4da88f882e6b4720be6f "Cusick,C." . _:N5906b8e5809e4da88f882e6b4720be6f . _:N5906b8e5809e4da88f882e6b4720be6f "Neumann,A." . _:N2347075506274dc480ccd938b78aeb29 . _:N02661acab05c4ddb80eb7823637b5fda . _:N5906b8e5809e4da88f882e6b4720be6f "Pierce,V." . _:N5906b8e5809e4da88f882e6b4720be6f "Normandin,E." . _:N5906b8e5809e4da88f882e6b4720be6f "Cerrato,F." . _:N9f5ae5cd1fb2466690374bdc4b076ce8 "2020-03-07" . _:N5906b8e5809e4da88f882e6b4720be6f "Harris,J." . _:N5906b8e5809e4da88f882e6b4720be6f "Rudy,M." . _:N5906b8e5809e4da88f882e6b4720be6f "Gallagher,G." . _:N5906b8e5809e4da88f882e6b4720be6f "Turbett,S." . _:N5906b8e5809e4da88f882e6b4720be6f "Rosenberg,E." . _:N5906b8e5809e4da88f882e6b4720be6f "Gnirke,A." . _:N5906b8e5809e4da88f882e6b4720be6f "DeRuff,K." . _:N9f5ae5cd1fb2466690374bdc4b076ce8 . _:N5906b8e5809e4da88f882e6b4720be6f "Park,D.J." . _:N5906b8e5809e4da88f882e6b4720be6f "Chaluvadi,S." . _:N5906b8e5809e4da88f882e6b4720be6f "Slater,D." . _:N9f5ae5cd1fb2466690374bdc4b076ce8 "MT873313.1" . _:N5906b8e5809e4da88f882e6b4720be6f "Carter,A." . _:N2347075506274dc480ccd938b78aeb29 "https://dockstore.org/workflows/github.com/broadinstitute/viral-pipelines/assemble_refbased:v2.0.21.1 v. 2.0.21.1" . _:N2347075506274dc480ccd938b78aeb29 . _:N5906b8e5809e4da88f882e6b4720be6f "Siddle,K.J." . _:N5906b8e5809e4da88f882e6b4720be6f "Adams,G." . _:N9f5ae5cd1fb2466690374bdc4b076ce8 . _:N5906b8e5809e4da88f882e6b4720be6f "Lemieux,J.E." . _:N5906b8e5809e4da88f882e6b4720be6f "Flowers,K." . _:N5906b8e5809e4da88f882e6b4720be6f "Sabeti,P.C." . _:N5906b8e5809e4da88f882e6b4720be6f "Bauer,M." . _:N5906b8e5809e4da88f882e6b4720be6f "Tomkins-Tinch,C." . _:N9f5ae5cd1fb2466690374bdc4b076ce8 . _:Nd3a9a555c3154017ad328af1bf9bf258 "SARS-CoV-2/human/USA/MA-DPH-00009/2020" . _:N5906b8e5809e4da88f882e6b4720be6f "LaRocque,R." . _:N5906b8e5809e4da88f882e6b4720be6f "Chapman,S.B." . _:N5906b8e5809e4da88f882e6b4720be6f "Reilly,S." . _:N5906b8e5809e4da88f882e6b4720be6f "Loreth,C." . _:N5906b8e5809e4da88f882e6b4720be6f "Shaw,B." . _:N2347075506274dc480ccd938b78aeb29 "7.527672809"^^ . _:Nd3a9a555c3154017ad328af1bf9bf258 . _:Nd3a9a555c3154017ad328af1bf9bf258 . _:N5906b8e5809e4da88f882e6b4720be6f "Lagerborg,K." . _:N5906b8e5809e4da88f882e6b4720be6f "Ryan,E." . _:N5906b8e5809e4da88f882e6b4720be6f "Lin,A.E." . "MT791855.1" . _:Nb07e3d54092147c98af1c621895193dc . _:Ndda79b6505a3498a876c0f207555ea5b "Blanton,J." . _:N04714111ac054b2e869fc733195841f1 . _:Ndda79b6505a3498a876c0f207555ea5b . _:Nf4d35485edcd4e86b0269969e56a49be . _:Ndda79b6505a3498a876c0f207555ea5b "BPHL" . _:Nf4d35485edcd4e86b0269969e56a49be . _:Nf4d35485edcd4e86b0269969e56a49be "MT791855.1" . _:Ndda79b6505a3498a876c0f207555ea5b "FLDOH, 1217 N Pearl St, Jacksonville, FL 32202, USA" . _:N51c1719c44374ca28aceb727ee4f6406 . _:N51c1719c44374ca28aceb727ee4f6406 "bwa v. 0.7.17; ivar v. 1.2.2" . _:Nf4d35485edcd4e86b0269969e56a49be "2020-03-26" . _:Nb07e3d54092147c98af1c621895193dc . _:N04714111ac054b2e869fc733195841f1 . _:Ndda79b6505a3498a876c0f207555ea5b "Schmedes,S." . _:N04714111ac054b2e869fc733195841f1 "SARS-CoV-2/human/USA/FL-BPHL-0494/2020" . _:Nf4d35485edcd4e86b0269969e56a49be . _:N51c1719c44374ca28aceb727ee4f6406 . "MT334571.1" . "true"^^ . _:N6aed4d5ec7744af4b61a4ab30b5fcf45 . _:N5b91d0c256b846bc85d8813090c13fc4 . _:N8511ff6b9c204c099dd561be247bf0f2 . _:N3e0d5d2d539747f5b8f10bbf2918575d . _:Nc01546bdfafa4620a9f71cd7b3f989d0 "Utah Public Health Laboratory, 4431 2700 W, SLC, UT 84129, USA" . _:N6aed4d5ec7744af4b61a4ab30b5fcf45 . _:N3e0d5d2d539747f5b8f10bbf2918575d . _:N8511ff6b9c204c099dd561be247bf0f2 "bwa v. 0.7.17-r1188; ivar v. 1.2" . _:N6aed4d5ec7744af4b61a4ab30b5fcf45 . _:N8511ff6b9c204c099dd561be247bf0f2 . _:Nc01546bdfafa4620a9f71cd7b3f989d0 "Young,E." . _:N3e0d5d2d539747f5b8f10bbf2918575d "SARS-CoV-2/human/USA/UT-00350/2020" . _:Nc01546bdfafa4620a9f71cd7b3f989d0 "Oakeson,K." . _:Nc01546bdfafa4620a9f71cd7b3f989d0 "Department of Health" . _:Nc01546bdfafa4620a9f71cd7b3f989d0 . _:N6aed4d5ec7744af4b61a4ab30b5fcf45 "MT334571.1" . _:N6aed4d5ec7744af4b61a4ab30b5fcf45 "2020-03-26" . _:N5b91d0c256b846bc85d8813090c13fc4 . "MT451104.1" . _:N37ec383ad80640feaa969f25ce77b319 . _:N5b04bcdd37734d998cb79385e97981ec "Horan,K." . _:Nb2be6195ef8a40f4b6e8fec3ce0b2b45 . _:N5b04bcdd37734d998cb79385e97981ec "Sherry,N.L." . _:Neb6987ff288c4200914cf92211b8a5a6 "3000.0"^^ . _:N5b04bcdd37734d998cb79385e97981ec "Caly,L." . _:N37ec383ad80640feaa969f25ce77b319 . _:N5b04bcdd37734d998cb79385e97981ec "van Diemen,A." . _:N5b04bcdd37734d998cb79385e97981ec "Alpren,C." . _:N5b04bcdd37734d998cb79385e97981ec "Ballard,S.A." . _:N5b04bcdd37734d998cb79385e97981ec "Lane,C.R." . _:N5b04bcdd37734d998cb79385e97981ec "Dougal,S." . _:Nb2be6195ef8a40f4b6e8fec3ce0b2b45 . _:N37ec383ad80640feaa969f25ce77b319 "SARS-CoV-2/human/AUS/VIC203/2020" . _:N5b04bcdd37734d998cb79385e97981ec "Williamson,D.A." . _:N5b04bcdd37734d998cb79385e97981ec "Howden,B.P." . _:N5b04bcdd37734d998cb79385e97981ec . _:N5b04bcdd37734d998cb79385e97981ec "Hoang,T." . _:Neb6987ff288c4200914cf92211b8a5a6 "minimap2 v. 2.17-r941; samtools v. 1.10; ivar v. 1.2.1" . _:Nb2be6195ef8a40f4b6e8fec3ce0b2b45 "MT451104.1" . _:N5b04bcdd37734d998cb79385e97981ec "Schultz,M.B." . _:Nb2be6195ef8a40f4b6e8fec3ce0b2b45 . _:N5b04bcdd37734d998cb79385e97981ec "Duchene,S." . _:N5b04bcdd37734d998cb79385e97981ec "Seemann,T." . _:N5b04bcdd37734d998cb79385e97981ec "Goncalves da Silva,A." . _:N5b04bcdd37734d998cb79385e97981ec "Catton,M." . _:N5b04bcdd37734d998cb79385e97981ec "Stinear,T.P." . _:Neb6987ff288c4200914cf92211b8a5a6 . _:Neb6987ff288c4200914cf92211b8a5a6 . _:N656f5a54a2bd4e0a951c004af2233a7e . _:N5b04bcdd37734d998cb79385e97981ec "Sutton,B." . _:Nb2be6195ef8a40f4b6e8fec3ce0b2b45 "2020-03-19" . _:N5b04bcdd37734d998cb79385e97981ec "Sait,M." . _:N656f5a54a2bd4e0a951c004af2233a7e . _:N5b04bcdd37734d998cb79385e97981ec "Easton,M." . _:N5b04bcdd37734d998cb79385e97981ec "Druce,J." . "SRR12045781" . _:Nba4f3dd3929947a993fc94c9d79201ae "SRR12045781" . _:N8527253d56b14541b4bf219fd7759a4e "UT-01840" . _:N8527253d56b14541b4bf219fd7759a4e . _:Na3d9434852d140268481a5ed46415a9f . _:Nba4f3dd3929947a993fc94c9d79201ae "Utah Public Health Laboratory" . _:N810232e629b642c0a3eeb7b20eb37962 . _:Nba4f3dd3929947a993fc94c9d79201ae . _:Nabc8fec1fa7749f2ba81e723d0ed8609 . _:N810232e629b642c0a3eeb7b20eb37962 "Erin Young" . _:N810232e629b642c0a3eeb7b20eb37962 "Department of Health" . _:Nabc8fec1fa7749f2ba81e723d0ed8609 "LIBRARY_STRATEGY: AMPLICON;" . _:Na3d9434852d140268481a5ed46415a9f . _:Nabc8fec1fa7749f2ba81e723d0ed8609 . _:Nba4f3dd3929947a993fc94c9d79201ae . _:N8527253d56b14541b4bf219fd7759a4e . _:N810232e629b642c0a3eeb7b20eb37962 "PRJNA614995" . _:N810232e629b642c0a3eeb7b20eb37962 "SRA1088691" . _:N810232e629b642c0a3eeb7b20eb37962 "Utah Public Health Laboratory; Utah Public Health Laboratory Infectious Disease submission group; 4431 S 2700 W; Salt Lake City; UT; USA; Postal code 84129" . _:Nba4f3dd3929947a993fc94c9d79201ae "2020-04-13" . _:N810232e629b642c0a3eeb7b20eb37962 "eriny@utah.gov" . _:N810232e629b642c0a3eeb7b20eb37962 "Utah Public Health Laboratory Infectious Disease submission group" . "MT831255.1" . _:Nc0951773cf684dc48104876d57f6e730 . _:Nc0951773cf684dc48104876d57f6e730 . _:Nc90f7a7de4b3400394f8d6fd99629676 . _:Nc90f7a7de4b3400394f8d6fd99629676 . _:N78073fb3b1574ea7afc244daf4bbfcc2 "Lee,J." . _:N78073fb3b1574ea7afc244daf4bbfcc2 . _:N78073fb3b1574ea7afc244daf4bbfcc2 "Thompson,M." . _:N78073fb3b1574ea7afc244daf4bbfcc2 "Shendure,J." . _:N78073fb3b1574ea7afc244daf4bbfcc2 "Richardson,M." . _:N78073fb3b1574ea7afc244daf4bbfcc2 "Starita,L.M." . _:N78073fb3b1574ea7afc244daf4bbfcc2 "Dykema,P." . _:N2ccf63b64c0b46d1855d7bc94b44f780 "https://github.com/seattleflu/assembly v. July-2020" . _:N78073fb3b1574ea7afc244daf4bbfcc2 "Lutz,B.R." . _:Nc0951773cf684dc48104876d57f6e730 "MT831255.1" . _:N78073fb3b1574ea7afc244daf4bbfcc2 "Sibley,T.R." . _:N78073fb3b1574ea7afc244daf4bbfcc2 "Lindquist,S." . _:N78073fb3b1574ea7afc244daf4bbfcc2 "Englund,J.A." . _:N78073fb3b1574ea7afc244daf4bbfcc2 "Bedford,T." . _:Nc0951773cf684dc48104876d57f6e730 "2020-06-02" . _:N78073fb3b1574ea7afc244daf4bbfcc2 "Fay,K." . _:N78073fb3b1574ea7afc244daf4bbfcc2 "University of Washington Medical Center" . _:N2ccf63b64c0b46d1855d7bc94b44f780 . _:N78073fb3b1574ea7afc244daf4bbfcc2 "Gautom,R." . _:N78073fb3b1574ea7afc244daf4bbfcc2 "Frazar,C.D." . _:N01f2db2294484414aa9d7e378de503c6 . _:Nc0951773cf684dc48104876d57f6e730 . _:Nc0951773cf684dc48104876d57f6e730 . _:N78073fb3b1574ea7afc244daf4bbfcc2 "Nickerson,D.A." . _:N78073fb3b1574ea7afc244daf4bbfcc2 "Ilcisin,M." . _:N78073fb3b1574ea7afc244daf4bbfcc2 "Rieder,M.J." . _:N78073fb3b1574ea7afc244daf4bbfcc2 "Boeckh,M." . _:N78073fb3b1574ea7afc244daf4bbfcc2 "Brandstetter,E." . _:N2ccf63b64c0b46d1855d7bc94b44f780 . _:N78073fb3b1574ea7afc244daf4bbfcc2 "Seattle Flu Study, 1959 NE Pacific Street, Seattle, WA 98195, USA" . _:N78073fb3b1574ea7afc244daf4bbfcc2 "Famulare,M." . _:Nc90f7a7de4b3400394f8d6fd99629676 "SARS-CoV-2/human/USA/WA-S1946/2020" . _:N78073fb3b1574ea7afc244daf4bbfcc2 "Truong,M." . _:N78073fb3b1574ea7afc244daf4bbfcc2 "Adler,A." . _:N78073fb3b1574ea7afc244daf4bbfcc2 "Chu,H.Y." . _:N78073fb3b1574ea7afc244daf4bbfcc2 "Pelle,B." . _:N78073fb3b1574ea7afc244daf4bbfcc2 "Hiatt,B." . _:N78073fb3b1574ea7afc244daf4bbfcc2 "Lacombe,K." . _:N78073fb3b1574ea7afc244daf4bbfcc2 "Han,P.D." . _:N01f2db2294484414aa9d7e378de503c6 . _:N78073fb3b1574ea7afc244daf4bbfcc2 "Wolf,C.R." . _:N78073fb3b1574ea7afc244daf4bbfcc2 "Melly,G." . "SRR11479027" . _:Ndb7ef9dcc3e94651b0459664f7186a1d "PRJNA614995" . _:Ndb7ef9dcc3e94651b0459664f7186a1d "Erin Young" . _:N6c4e7ad57e5241ff838304a3c4cafc77 . _:N6c4e7ad57e5241ff838304a3c4cafc77 "Utah Public Health Laboratory" . _:N6c4e7ad57e5241ff838304a3c4cafc77 . _:Ndb7ef9dcc3e94651b0459664f7186a1d "eriny@utah.gov" . _:N0da175695d414b3697290879112bf36d . _:Nef6613fad4184151a7e90e6e21d30b69 "Clinical" . _:N6c4e7ad57e5241ff838304a3c4cafc77 "The 'collection_date' is estimated (the original date was: 2020-03)" . _:Nef6613fad4184151a7e90e6e21d30b69 . _:Nef6613fad4184151a7e90e6e21d30b69 . _:N6c4e7ad57e5241ff838304a3c4cafc77 . _:Ndb7ef9dcc3e94651b0459664f7186a1d . _:N6c4e7ad57e5241ff838304a3c4cafc77 "SRR11479027" . _:Ndb7ef9dcc3e94651b0459664f7186a1d "Department of Health; Utah Public Health Laboratory; 4431 2700 W; Salt Lake City; UT; USA; Postal code 84129" . _:N0da175695d414b3697290879112bf36d "LIBRARY_STRATEGY: AMPLICON;" . _:N6c4e7ad57e5241ff838304a3c4cafc77 "2020-03-15" . _:N0da175695d414b3697290879112bf36d . _:Na4d46ded6c0146fb9abb657a6dc5f952 . _:Ndb7ef9dcc3e94651b0459664f7186a1d "Utah Public Health Laboratory" . _:Na4d46ded6c0146fb9abb657a6dc5f952 . _:Ndb7ef9dcc3e94651b0459664f7186a1d "Department of Health" . _:Ndb7ef9dcc3e94651b0459664f7186a1d "SRA1062242" . _:Ndb7ef9dcc3e94651b0459664f7186a1d "Department of Health; Utah Public Health Laboratory; 4431 2700 W; Salt Lake City; UT; USA; Postal code 84129" . "MT322419.1" . _:N02fcdaf3df904de4a85643aea5d86b98 . _:N02fcdaf3df904de4a85643aea5d86b98 "custom pipeline v. 2020-03" . _:N8b5ce3eeda674f50b0cd1764446eea77 "Roychoudhury,P." . _:N8b5ce3eeda674f50b0cd1764446eea77 "Greninger,A." . _:N9156ac84f97e4abc9d25ca3b9b59f47e . _:N8b5ce3eeda674f50b0cd1764446eea77 "University of Washington, 1100 Fairview Ave N, PO Box 19024, E5-110, Seattle, WA 98109, USA" . _:N2153dbb756c9413a9fd5aa8d26b3e7fe "MT263402.1" . _:N02fcdaf3df904de4a85643aea5d86b98 . _:N8b5ce3eeda674f50b0cd1764446eea77 . _:N8b5ce3eeda674f50b0cd1764446eea77 "Laboratory Medicine" . _:N9156ac84f97e4abc9d25ca3b9b59f47e . _:N2153dbb756c9413a9fd5aa8d26b3e7fe "2020-03-23" . _:N2153dbb756c9413a9fd5aa8d26b3e7fe . _:N8b5ce3eeda674f50b0cd1764446eea77 "Jerome,K." . _:N2153dbb756c9413a9fd5aa8d26b3e7fe . _:N521aee7881444902b1ec67c44d7040af . _:N9156ac84f97e4abc9d25ca3b9b59f47e "SARS-CoV-2/human/USA/WA-UW322/2020" . _:N521aee7881444902b1ec67c44d7040af . _:N2153dbb756c9413a9fd5aa8d26b3e7fe . "MT612185.1" . _:N13775760fb9f45e89536df1380186a33 "Caly,L." . _:N13775760fb9f45e89536df1380186a33 "Barreto,I." . _:N7760ce291a6d48a890c2ff882aa1b0b2 "minimap2 v. 2.17; iVar v. 1.2.1; samtools v. 1.10" . _:N13775760fb9f45e89536df1380186a33 "Sherry,N." . _:N13775760fb9f45e89536df1380186a33 "Wapling,J." . _:N13775760fb9f45e89536df1380186a33 "Douglas,N." . _:N13775760fb9f45e89536df1380186a33 "Druce,J." . _:N13775760fb9f45e89536df1380186a33 "Freeman,K." . _:N13775760fb9f45e89536df1380186a33 "Salles de Sousa,A." . _:N13775760fb9f45e89536df1380186a33 . _:N0c8ae76f36ed4b7f99ad28abd44bf435 "The 'collection_date' is estimated (the original date was: 2020)" . _:N0c8ae76f36ed4b7f99ad28abd44bf435 "Victorian Infectious Diseases Reference Laboratory (VIDRL)" . _:N310e11b121904418a58edc4373e1b6cb . _:N310e11b121904418a58edc4373e1b6cb . _:N0c8ae76f36ed4b7f99ad28abd44bf435 "2020-01-15" . _:N13775760fb9f45e89536df1380186a33 "Francis,J." . _:N13775760fb9f45e89536df1380186a33 "Baird,R." . _:N22a8ecf506704779a1ffa9de6dad25dd . _:N0c8ae76f36ed4b7f99ad28abd44bf435 . _:N0c8ae76f36ed4b7f99ad28abd44bf435 . _:N13775760fb9f45e89536df1380186a33 "Soares da Silva,E." . _:N13775760fb9f45e89536df1380186a33 "Dolores de Jesus da Costa,M." . _:N13775760fb9f45e89536df1380186a33 "Dakh,F." . _:N13775760fb9f45e89536df1380186a33 "Canisia,D." . _:N13775760fb9f45e89536df1380186a33 "Meumann,E." . _:N0c8ae76f36ed4b7f99ad28abd44bf435 . _:N13775760fb9f45e89536df1380186a33 "Schultz,M.B." . _:N22a8ecf506704779a1ffa9de6dad25dd . _:N13775760fb9f45e89536df1380186a33 "Sait,M." . _:N13775760fb9f45e89536df1380186a33 "Seemann,T." . _:N13775760fb9f45e89536df1380186a33 "Antonia da Costa,E." . _:N13775760fb9f45e89536df1380186a33 "Marr,I." . _:N0c8ae76f36ed4b7f99ad28abd44bf435 "MT612185.1" . _:N13775760fb9f45e89536df1380186a33 "Jayanti Pereira Tilman,A." . _:N13775760fb9f45e89536df1380186a33 "Ximenes,J." . _:N7760ce291a6d48a890c2ff882aa1b0b2 . _:N310e11b121904418a58edc4373e1b6cb "SARS-CoV-2/human/AUS/VIC1575/2020" . _:N7760ce291a6d48a890c2ff882aa1b0b2 . "MT460140.1" . _:Nab11697d04a641bead72e9b322f2075d "Goncalves da Silva,A." . _:Nab11697d04a641bead72e9b322f2075d "Catton,M." . _:Nab11697d04a641bead72e9b322f2075d . _:N7ba4a68a8e584c7abbef9bedd29cb4b6 . _:Nab11697d04a641bead72e9b322f2075d "van Diemen,A." . _:Nab11697d04a641bead72e9b322f2075d "Seemann,T." . _:Ne7dcb631091d4bb8941e141c72af99e4 "minimap2 v. 2.17-r941; samtools v. 1.10; ivar v. 1.2.1" . _:Nab11697d04a641bead72e9b322f2075d "Caly,L." . _:Nab11697d04a641bead72e9b322f2075d "Hoang,T." . _:Nab11697d04a641bead72e9b322f2075d "Lane,C.R." . _:N22d306d7cc0d40de988a49530ec1e6b3 . _:N7ba4a68a8e584c7abbef9bedd29cb4b6 . _:N7ba4a68a8e584c7abbef9bedd29cb4b6 "MT451841.1" . _:Nab11697d04a641bead72e9b322f2075d "Stinear,T.P." . _:Nab11697d04a641bead72e9b322f2075d "Dougal,S." . _:Nab11697d04a641bead72e9b322f2075d "Alpren,C." . _:N22d306d7cc0d40de988a49530ec1e6b3 . _:Na66b657dbb24472f8f87a2daf3a7b9cb . _:N7ba4a68a8e584c7abbef9bedd29cb4b6 . _:Nab11697d04a641bead72e9b322f2075d "Howden,B.P." . _:Ne7dcb631091d4bb8941e141c72af99e4 . _:Nab11697d04a641bead72e9b322f2075d "Sherry,N.L." . _:Nab11697d04a641bead72e9b322f2075d "Easton,M." . _:Nab11697d04a641bead72e9b322f2075d "Ballard,S.A." . _:Nab11697d04a641bead72e9b322f2075d "Druce,J." . _:Nab11697d04a641bead72e9b322f2075d "Sait,M." . _:Nab11697d04a641bead72e9b322f2075d "Duchene,S." . _:Na66b657dbb24472f8f87a2daf3a7b9cb . _:N7ba4a68a8e584c7abbef9bedd29cb4b6 "2020-04-14" . _:Nab11697d04a641bead72e9b322f2075d "Williamson,D.A." . _:Ne7dcb631091d4bb8941e141c72af99e4 . _:N22d306d7cc0d40de988a49530ec1e6b3 "SARS-CoV-2/human/AUS/VIC1273/2020" . _:Nab11697d04a641bead72e9b322f2075d "Horan,K." . _:Ne7dcb631091d4bb8941e141c72af99e4 "3000.0"^^ . _:Nab11697d04a641bead72e9b322f2075d "Sutton,B." . _:Nab11697d04a641bead72e9b322f2075d "Schultz,M.B." . "MT326100.1" . _:N32e5c6499af9474182743159dbd8dc66 . _:N0f1c94850031452fb9e57bc8e173983b . _:N0cc1e5fe34cb47f38b55243793c217d2 "Laboratory Medicine" . _:N0f1c94850031452fb9e57bc8e173983b . _:N32e5c6499af9474182743159dbd8dc66 "SARS-CoV-2/human/USA/WA-UW-1805/2020" . _:N0cc1e5fe34cb47f38b55243793c217d2 "University of Washington, 1100 Fairview Ave N, PO Box 19024, E5-110, Seattle, WA 98109, USA" . _:N0f1c94850031452fb9e57bc8e173983b . _:N32e5c6499af9474182743159dbd8dc66 . _:Nfaff6710659a472eb4e6eda4d73c398f . _:N0cc1e5fe34cb47f38b55243793c217d2 "Greninger,A." . _:Nfaff6710659a472eb4e6eda4d73c398f "custom v. 2020-03" . _:Nc272befe5ac240f9bbc5fa64d5b5798d . _:N0f1c94850031452fb9e57bc8e173983b "MT326100.1" . _:N0cc1e5fe34cb47f38b55243793c217d2 . _:N0f1c94850031452fb9e57bc8e173983b "2020-03-22" . _:Nc272befe5ac240f9bbc5fa64d5b5798d . _:N0cc1e5fe34cb47f38b55243793c217d2 "Roychoudhury,P." . _:N0cc1e5fe34cb47f38b55243793c217d2 "Jerome,K." . _:N0f1c94850031452fb9e57bc8e173983b . _:N0f1c94850031452fb9e57bc8e173983b . _:Nfaff6710659a472eb4e6eda4d73c398f . "SRR11859129" . _:Nb906dd9dbe3842a8b0e4b2dc35e8d952 . _:Nb906dd9dbe3842a8b0e4b2dc35e8d952 "2020-03-05" . _:Nd2d48d0ba199496ca962b3f9a14f5d07 . _:N6a2f013aa18844a8864119487196a47b . _:N48e2114f74af46d3bfd688f547ce62b3 "Laboratory Medicine" . _:Nb906dd9dbe3842a8b0e4b2dc35e8d952 . _:N48e2114f74af46d3bfd688f547ce62b3 "University of California San Francisco" . _:N48e2114f74af46d3bfd688f547ce62b3 "Xianding Deng" . _:N48e2114f74af46d3bfd688f547ce62b3 "Laboratory Medicine; University of California San Francisco; 600-16th Street; San Francisco; California; USA; Postal code 94158" . _:N48e2114f74af46d3bfd688f547ce62b3 "SRA1080605" . _:N3cc3090b2dea438a9f853cd715bbb17a "LIBRARY_STRATEGY: AMPLICON;" . _:N48e2114f74af46d3bfd688f547ce62b3 . _:Nb906dd9dbe3842a8b0e4b2dc35e8d952 "SRR11859129" . _:N48e2114f74af46d3bfd688f547ce62b3 "Laboratory Medicine; University of California San Francisco; 600-16th Street; San Francisco; California; USA; Postal code 94158" . _:N3cc3090b2dea438a9f853cd715bbb17a . _:N48e2114f74af46d3bfd688f547ce62b3 "wayne.deng09@gmail.com" . _:N6a2f013aa18844a8864119487196a47b . _:N3cc3090b2dea438a9f853cd715bbb17a . _:Nd2d48d0ba199496ca962b3f9a14f5d07 . _:N48e2114f74af46d3bfd688f547ce62b3 "PRJNA629889" . _:Nb906dd9dbe3842a8b0e4b2dc35e8d952 "California Department of Public Health" . "MT477842.1" . _:N2349d0c4c1324438bfce2b8cf2923e5f . _:N5e860c7dd3ff431285aef5b616a1d5e5 . _:N54b5f3b0858043529093024c984849f1 . _:N54b5f3b0858043529093024c984849f1 "Alaska State Virology Laboratory" . _:N2349d0c4c1324438bfce2b8cf2923e5f . _:Nae6138493ae34e588af2ee563dbb4fd6 "Sequencher v. 5.1" . _:N54b5f3b0858043529093024c984849f1 "Deuling,H." . _:N6ffae132f5fd4ba88848a49a37afdcbb . _:Nae6138493ae34e588af2ee563dbb4fd6 . _:N54b5f3b0858043529093024c984849f1 "1051 Sheenjek Dr, Fairbanks, AK 99709, USA" . _:N6ffae132f5fd4ba88848a49a37afdcbb . _:N2349d0c4c1324438bfce2b8cf2923e5f "2020-03-23" . _:N2349d0c4c1324438bfce2b8cf2923e5f "MT477842.1" . _:N5e860c7dd3ff431285aef5b616a1d5e5 . _:N54b5f3b0858043529093024c984849f1 "DeRonde,S." . _:N54b5f3b0858043529093024c984849f1 "Chen,J." . _:Nae6138493ae34e588af2ee563dbb4fd6 . _:N5e860c7dd3ff431285aef5b616a1d5e5 "SARS-CoV-2/human/USA/AK034/2020" . _:N2349d0c4c1324438bfce2b8cf2923e5f . "MT810789.1" . _:N965c0e971450489e9e2008c32c914419 "Pacheco,O.R." . _:Nd2136f4cf1d9437d92b06bc68efcf897 "MT810789.1" . _:Nd2136f4cf1d9437d92b06bc68efcf897 "2020-04-29" . _:Nd2136f4cf1d9437d92b06bc68efcf897 . _:N965c0e971450489e9e2008c32c914419 . _:N965c0e971450489e9e2008c32c914419 "The Scripps Research Institute, 10550 N Torrey Pines Rd, San Diego, CA 92122, USA" . _:Nc9778b6d151e4eefb7b76bc949251731 "iVar v. 1.2.2" . _:Nc9778b6d151e4eefb7b76bc949251731 . _:N965c0e971450489e9e2008c32c914419 "SEARCH Alliance,S.D." . _:Nd2136f4cf1d9437d92b06bc68efcf897 . _:N6a219ad8686440d2a41d5af1ac11173b . _:N965c0e971450489e9e2008c32c914419 "Department of Immunology" . _:Nc9778b6d151e4eefb7b76bc949251731 . _:N6a219ad8686440d2a41d5af1ac11173b . _:N6a219ad8686440d2a41d5af1ac11173b "SARS-CoV-2/human/MEX/SEARCH-1715-TIJ/2020" . _:Nb146ea521988424d98ccaf89e0680bb0 . _:Nd2136f4cf1d9437d92b06bc68efcf897 . _:Nd2136f4cf1d9437d92b06bc68efcf897 . _:Nb146ea521988424d98ccaf89e0680bb0 . _:N965c0e971450489e9e2008c32c914419 "Alvarez,S.N." . _:N965c0e971450489e9e2008c32c914419 "Cota Haros,C.A." . "MT262897.1" . _:N9f74d85ae532401cb88e58e9537bb5ec "Li,Y." . _:N62a8cb9597fe429996b49319f6dd88ab . _:N9f74d85ae532401cb88e58e9537bb5ec "Tong,S." . _:N6c719d288f484e4ca81800a1cba1bf55 "minimap v. 2.17; Sequencher v. 5.4.6" . _:N9f74d85ae532401cb88e58e9537bb5ec "Hiatt,B." . _:N9f74d85ae532401cb88e58e9537bb5ec "Tao,Y." . _:N62a8cb9597fe429996b49319f6dd88ab "MT262897.1" . _:N9f74d85ae532401cb88e58e9537bb5ec "Gant,J." . _:N9f74d85ae532401cb88e58e9537bb5ec . _:N9a9e671cf2e344e285450561b21e3e2a . _:Nbabec4eb45dd4201891cc5f131eb773b . _:N9f74d85ae532401cb88e58e9537bb5ec "Wang,H." . _:N9f74d85ae532401cb88e58e9537bb5ec "Queen,K." . _:N6c719d288f484e4ca81800a1cba1bf55 . _:N9a9e671cf2e344e285450561b21e3e2a "SARS-CoV-2/human/USA/WA-NH3/2020" . _:N62a8cb9597fe429996b49319f6dd88ab . _:N6c719d288f484e4ca81800a1cba1bf55 "20.0"^^ . _:N62a8cb9597fe429996b49319f6dd88ab "5' sequence is the sequencing primer used" . _:N62a8cb9597fe429996b49319f6dd88ab "2020-03-13" . _:N9a9e671cf2e344e285450561b21e3e2a . _:N9f74d85ae532401cb88e58e9537bb5ec "Russell,D." . _:N6c719d288f484e4ca81800a1cba1bf55 . _:N62a8cb9597fe429996b49319f6dd88ab . _:N9f74d85ae532401cb88e58e9537bb5ec "Paden,C.R." . _:Nbabec4eb45dd4201891cc5f131eb773b . _:N62a8cb9597fe429996b49319f6dd88ab . _:N9f74d85ae532401cb88e58e9537bb5ec "Jacobs,J." . _:N9f74d85ae532401cb88e58e9537bb5ec "Uehara,A." . _:N9f74d85ae532401cb88e58e9537bb5ec "Zhang,J." . _:N6c719d288f484e4ca81800a1cba1bf55 . _:N62a8cb9597fe429996b49319f6dd88ab . "MT704095.1" . _:N942bb088d86947ff8d14f26625853030 "2020-05-08" . _:N942bb088d86947ff8d14f26625853030 . _:Na7abcfd276f0495cb120a5dc079b8567 "SARS-CoV-2/human/USA/FL-BPHL-0277/2020" . _:N5d72dfbe34e740ac8f2f531e6f13dbd8 "bwa v. 0.7.17; ivar v. 1.2.2" . _:N942bb088d86947ff8d14f26625853030 . _:N2ae9fce2e92d433cb357eecf15c949b2 "Schmedes,S." . _:N2ae9fce2e92d433cb357eecf15c949b2 . _:N942bb088d86947ff8d14f26625853030 . _:N942bb088d86947ff8d14f26625853030 "MT704095.1" . _:N5d72dfbe34e740ac8f2f531e6f13dbd8 . _:Na7abcfd276f0495cb120a5dc079b8567 . _:N5d72dfbe34e740ac8f2f531e6f13dbd8 . _:N2ae9fce2e92d433cb357eecf15c949b2 "BPHL" . _:N22e9412e3e504522873c2102e0b49aad . _:N2ae9fce2e92d433cb357eecf15c949b2 "Blanton,J." . _:Na7abcfd276f0495cb120a5dc079b8567 . _:N22e9412e3e504522873c2102e0b49aad . _:N2ae9fce2e92d433cb357eecf15c949b2 "FLDOH, 1217 N Pearl St, Jacksonville, FL 32202, USA" . "MT520290.1" . _:Ncf1705955ebb4b1ab09e1e3d6b378c6d . _:Ncf1705955ebb4b1ab09e1e3d6b378c6d "CLC Genomics Workbench v. 20" . _:N6bf8f8a0c9c4464f8f813e8d519edddf "Seltzer,T.A." . _:N6bf8f8a0c9c4464f8f813e8d519edddf "Juarez,A." . _:N6bf8f8a0c9c4464f8f813e8d519edddf "Bailey,A.G." . _:N6bf8f8a0c9c4464f8f813e8d519edddf "Eason,A.B." . _:Nda424824914d4724b1cbc645591725bd "MT528610.1" . _:Nda424824914d4724b1cbc645591725bd . _:Nda424824914d4724b1cbc645591725bd "2020-04-15" . _:N841bc21bccf24611a6afbd227f7a652c . _:N6bf8f8a0c9c4464f8f813e8d519edddf "Moorad,R." . _:Nda424824914d4724b1cbc645591725bd . _:N6bf8f8a0c9c4464f8f813e8d519edddf "University of North Carolina, 450 West Drive, Chapel Hill, NC 27514, USA" . _:Nda424824914d4724b1cbc645591725bd . _:N6bf8f8a0c9c4464f8f813e8d519edddf "Vahrson,W." . _:N7583347c772144b6a650b2251e75de10 . _:N6bf8f8a0c9c4464f8f813e8d519edddf "Thompson,C." . _:Nda424824914d4724b1cbc645591725bd . _:N6bf8f8a0c9c4464f8f813e8d519edddf "Miller,M.B." . _:N6bf8f8a0c9c4464f8f813e8d519edddf "Villamor,F." . _:N6bf8f8a0c9c4464f8f813e8d519edddf "Dittmer,D." . _:N6bf8f8a0c9c4464f8f813e8d519edddf "Pluta,L.J." . _:N6bf8f8a0c9c4464f8f813e8d519edddf "Microbiology & Immunology" . _:N841bc21bccf24611a6afbd227f7a652c "SARS-CoV-2/human/USA/UNC_200259/2020" . _:Nda424824914d4724b1cbc645591725bd "The 'collection_date' is estimated (the original date was: 2020-04)" . _:N841bc21bccf24611a6afbd227f7a652c . _:Nda424824914d4724b1cbc645591725bd "Dirk Dittmer" . _:Ncf1705955ebb4b1ab09e1e3d6b378c6d . _:N6bf8f8a0c9c4464f8f813e8d519edddf "McNamara,R.P." . _:N6bf8f8a0c9c4464f8f813e8d519edddf "Caro-Vegas,C.P." . _:N7583347c772144b6a650b2251e75de10 . _:N6bf8f8a0c9c4464f8f813e8d519edddf "Landis,J.T." . _:N6bf8f8a0c9c4464f8f813e8d519edddf . "MT856458.1" . _:N1085c0228b5a4e5bb856039c41f0c0fe "2020-05-31" . _:N1085c0228b5a4e5bb856039c41f0c0fe "MT856458.1" . _:N75983b552d3246739c5fb7d621449ce6 "Habib,M.A." . _:N75983b552d3246739c5fb7d621449ce6 "Osman,E." . _:N75983b552d3246739c5fb7d621449ce6 "Banu,T.A." . _:N75983b552d3246739c5fb7d621449ce6 "Jahan,I." . _:N75983b552d3246739c5fb7d621449ce6 "Goswami,B." . _:N75983b552d3246739c5fb7d621449ce6 "Yeasmin,M." . _:N75983b552d3246739c5fb7d621449ce6 "Ray,U.C." . _:N75983b552d3246739c5fb7d621449ce6 "Akter,S." . _:N75983b552d3246739c5fb7d621449ce6 "Uzzaman,M.S." . _:N75983b552d3246739c5fb7d621449ce6 "Hossain,M.S." . _:N75983b552d3246739c5fb7d621449ce6 "Mohammad Mahmud,A.S." . _:N75983b552d3246739c5fb7d621449ce6 "Shamsuzzaman,A.K.M." . _:N1085c0228b5a4e5bb856039c41f0c0fe . _:N29f3317db7db4887bd5579982d67995b . _:N75983b552d3246739c5fb7d621449ce6 "Sajib,S.A." . _:N1085c0228b5a4e5bb856039c41f0c0fe . _:N75983b552d3246739c5fb7d621449ce6 "Sarkar,M.M.H." . _:N311a706bb2c54a278ad01629a908743d . _:Nbd6fa614b2774214810a31419f685b58 . _:Nbd6fa614b2774214810a31419f685b58 . _:N75983b552d3246739c5fb7d621449ce6 "Molla,M.M.A." . _:N75983b552d3246739c5fb7d621449ce6 "Nafisa,T." . _:N75983b552d3246739c5fb7d621449ce6 "Khan,M.S." . _:N75983b552d3246739c5fb7d621449ce6 . _:N1085c0228b5a4e5bb856039c41f0c0fe . _:N311a706bb2c54a278ad01629a908743d "DRAGEN RNA Pathogen Detection v. 3.5.14" . _:N29f3317db7db4887bd5579982d67995b "SARS-CoV-2/human/BGD/BCSIR_NILMRC_323/2020" . _:N75983b552d3246739c5fb7d621449ce6 "Al Din,S.M.S." . _:N311a706bb2c54a278ad01629a908743d . _:N75983b552d3246739c5fb7d621449ce6 "Ghosh,A.K." . _:N29f3317db7db4887bd5579982d67995b . _:N1085c0228b5a4e5bb856039c41f0c0fe . "MT506699.1" . _:N823462fc31624d8ca5067d1033567cd6 . _:N1f5c9f12600a4412a035d9d64ab290b4 "Department of General Services" . _:N1f5c9f12600a4412a035d9d64ab290b4 "Division of Consolidated Laboratory Services, 600 N 5th Street, Richmond, VA 23219, USA" . _:N05c020b08d9a4951b96c313ee53c2e74 . _:Na167b8311537488c83127c4e23d4a55e . _:N1f5c9f12600a4412a035d9d64ab290b4 . _:N1f5c9f12600a4412a035d9d64ab290b4 "Fink,L." . _:N05c020b08d9a4951b96c313ee53c2e74 "MT482117.1" . _:N05c020b08d9a4951b96c313ee53c2e74 . _:Na167b8311537488c83127c4e23d4a55e . _:Na081a334b02741c09db43f3fef508c34 . _:Na167b8311537488c83127c4e23d4a55e "minimap2 v. 2.17; ivar v. 1.1" . _:N823462fc31624d8ca5067d1033567cd6 "SARS-CoV-2/human/USA/VA-DCLS-0131/2020" . _:N05c020b08d9a4951b96c313ee53c2e74 "2020-04-15" . _:N05c020b08d9a4951b96c313ee53c2e74 "The 'collection_date' is estimated (the original date was: 2020-04)" . _:Na081a334b02741c09db43f3fef508c34 . _:N05c020b08d9a4951b96c313ee53c2e74 . _:N823462fc31624d8ca5067d1033567cd6 . "MT246473.1" . _:N355eb535554d4ec8a8c1d1695d455694 . _:N0e01c7644fa4451aad6745c57ca075e0 "SARS-CoV-2/human/USA/WA-UW154/2020" . _:N5abbd0c18c4d44469c1dc036121e6166 "custom pipeline v. 2020-03" . _:Nc7b4efc02cff4235b58ff3daa5c4c767 . _:Nc7b4efc02cff4235b58ff3daa5c4c767 . _:N355eb535554d4ec8a8c1d1695d455694 "Laboratory Medicine" . _:Nc7b4efc02cff4235b58ff3daa5c4c767 . _:Nc7b4efc02cff4235b58ff3daa5c4c767 "2020-03-14" . _:N355eb535554d4ec8a8c1d1695d455694 "Roychoudhury,P." . _:N0e01c7644fa4451aad6745c57ca075e0 . _:N5abbd0c18c4d44469c1dc036121e6166 . _:N355eb535554d4ec8a8c1d1695d455694 "Jerome,K." . _:N78c02c37d57d4716a8a813b12ded7183 . _:Nc7b4efc02cff4235b58ff3daa5c4c767 "MT252734.1" . _:N355eb535554d4ec8a8c1d1695d455694 "Greninger,A." . _:N355eb535554d4ec8a8c1d1695d455694 "University of Washington, 1100 Fairview Ave N, PO Box 19024, E5-110, Seattle, WA 98109, USA" . _:N78c02c37d57d4716a8a813b12ded7183 . _:N5abbd0c18c4d44469c1dc036121e6166 . _:N0e01c7644fa4451aad6745c57ca075e0 . "MT740441.1" . _:Nde17c4dd7722440a90cca7d181afbd45 "Trivedi,N." . _:Nde17c4dd7722440a90cca7d181afbd45 "Joshi,C." . _:Nde17c4dd7722440a90cca7d181afbd45 . _:Nde17c4dd7722440a90cca7d181afbd45 "Patel,N." . _:N869dc296d9f44bb08e96a520a3b548fe . _:Nde17c4dd7722440a90cca7d181afbd45 "Kadri,A.M." . _:Nde17c4dd7722440a90cca7d181afbd45 "Saiyed,Z." . _:N571648c259694559bf408ce701eef071 . _:Nbf358d2115f94f9c88c4bea6e386fbe8 "2020-06-14" . _:Nbf358d2115f94f9c88c4bea6e386fbe8 . _:Nde17c4dd7722440a90cca7d181afbd45 "Kumar,D." . _:Nde17c4dd7722440a90cca7d181afbd45 "Pandya,M." . _:N571648c259694559bf408ce701eef071 "SARS-CoV-2/human/IND/GBRC243/2020" . _:Nde17c4dd7722440a90cca7d181afbd45 "Patel,K." . _:N571648c259694559bf408ce701eef071 . _:Nde17c4dd7722440a90cca7d181afbd45 "Trivedi,P." . _:Nde17c4dd7722440a90cca7d181afbd45 "Ansari,A." . _:N869dc296d9f44bb08e96a520a3b548fe . _:Nde17c4dd7722440a90cca7d181afbd45 "Savaliya,N." . _:Nde17c4dd7722440a90cca7d181afbd45 "Gandhi,M." . _:Nbf358d2115f94f9c88c4bea6e386fbe8 . _:Nde17c4dd7722440a90cca7d181afbd45 "Joshi,M." . _:N361b33c13e084a0787cc38cbff1b7fac . _:Nde17c4dd7722440a90cca7d181afbd45 "Patel,Z." . _:N361b33c13e084a0787cc38cbff1b7fac . _:Nde17c4dd7722440a90cca7d181afbd45 "Khatri,H." . _:Nde17c4dd7722440a90cca7d181afbd45 "Kumar,R." . _:Nbf358d2115f94f9c88c4bea6e386fbe8 "MT740441.1" . _:Nbf358d2115f94f9c88c4bea6e386fbe8 . _:Nde17c4dd7722440a90cca7d181afbd45 "Puvar,A." . _:Nde17c4dd7722440a90cca7d181afbd45 "Bakshi,H." . _:N869dc296d9f44bb08e96a520a3b548fe "CLC Genomics Workbench v. 12" . _:Nde17c4dd7722440a90cca7d181afbd45 "Dixit,R.D." . _:Nde17c4dd7722440a90cca7d181afbd45 "Raval,J." . _:Nde17c4dd7722440a90cca7d181afbd45 "Pandya,L." . "MT635410.1" . _:N11dde24cb3d947a9b0b94b42c860dd82 "Patel,Z." . _:N8b5c1bf272774db59dcd3fa72dd73e21 . _:N7f8c20e5b2154c0193b4711265913eb9 . _:N11dde24cb3d947a9b0b94b42c860dd82 "Patel,N." . _:N11dde24cb3d947a9b0b94b42c860dd82 "Godbole,V." . _:N585ba09e86254abbb388807f81f2f1a0 . _:N7f8c20e5b2154c0193b4711265913eb9 . _:N11dde24cb3d947a9b0b94b42c860dd82 "Shah,M." . _:N11dde24cb3d947a9b0b94b42c860dd82 "Bagatharia,S." . _:N11dde24cb3d947a9b0b94b42c860dd82 "Shah,T." . _:N11dde24cb3d947a9b0b94b42c860dd82 "Nathani,N." . _:N11dde24cb3d947a9b0b94b42c860dd82 "Doshi,N." . _:N11dde24cb3d947a9b0b94b42c860dd82 "Joshi,M." . _:N11dde24cb3d947a9b0b94b42c860dd82 "Dixit,R.D." . _:N8b5c1bf272774db59dcd3fa72dd73e21 . _:N8b5c1bf272774db59dcd3fa72dd73e21 "MT635410.1" . _:N681d88b25ce143debabf86c6f46051bc . _:N11dde24cb3d947a9b0b94b42c860dd82 "Savaliya,N." . _:N11dde24cb3d947a9b0b94b42c860dd82 "Sabara,P." . _:N11dde24cb3d947a9b0b94b42c860dd82 "Pandya,L." . _:N8b5c1bf272774db59dcd3fa72dd73e21 . _:N11dde24cb3d947a9b0b94b42c860dd82 "Kumar,R." . _:N681d88b25ce143debabf86c6f46051bc . _:N11dde24cb3d947a9b0b94b42c860dd82 "Pandya,M." . _:N11dde24cb3d947a9b0b94b42c860dd82 "Bakshi,H." . _:N11dde24cb3d947a9b0b94b42c860dd82 "Joshi,C." . _:N11dde24cb3d947a9b0b94b42c860dd82 "Puvar,A." . _:N585ba09e86254abbb388807f81f2f1a0 . _:N8b5c1bf272774db59dcd3fa72dd73e21 . _:N11dde24cb3d947a9b0b94b42c860dd82 "Kumar,D." . _:N11dde24cb3d947a9b0b94b42c860dd82 "Gandhi,M." . _:N11dde24cb3d947a9b0b94b42c860dd82 "Kadri,A.M." . _:N11dde24cb3d947a9b0b94b42c860dd82 "Trivedi,P." . _:N11dde24cb3d947a9b0b94b42c860dd82 "Saiyed,Z." . _:N11dde24cb3d947a9b0b94b42c860dd82 . _:N11dde24cb3d947a9b0b94b42c860dd82 "Hinsu,A." . _:N7f8c20e5b2154c0193b4711265913eb9 "CLC Genomics Workbench v. 12" . _:N11dde24cb3d947a9b0b94b42c860dd82 "Patel,K." . _:N585ba09e86254abbb388807f81f2f1a0 "SARS-CoV-2/human/IND/GBRC196/2020" . _:N11dde24cb3d947a9b0b94b42c860dd82 "Raval,J." . _:N8b5c1bf272774db59dcd3fa72dd73e21 "2020-06-08" . "MT810542.1" . _:N7524ff1932654eeda48f2fd928c06279 . _:N7524ff1932654eeda48f2fd928c06279 . _:N3ce26b6797c54d599d59f176ec76c644 . _:Nc0b112c6ee0d4b0d98f3c77849699f88 "The Scripps Research Institute, 10550 N Torrey Pines Rd, San Diego, CA 92122, USA" . _:Nc0b112c6ee0d4b0d98f3c77849699f88 "SEARCH Alliance,S.D." . _:Nf2f4754f1ed5496d9ff148dfb22db3e7 . _:Nc0b112c6ee0d4b0d98f3c77849699f88 "Austin,B." . _:Nc0b112c6ee0d4b0d98f3c77849699f88 "Basler,T." . _:N7524ff1932654eeda48f2fd928c06279 . _:N29e49e15811b490fac496430506e98aa . _:N7524ff1932654eeda48f2fd928c06279 "MT810542.1" . _:Nc0b112c6ee0d4b0d98f3c77849699f88 "Shephard,J." . _:N7524ff1932654eeda48f2fd928c06279 "2020-04-02" . _:N3ce26b6797c54d599d59f176ec76c644 . _:Nc0b112c6ee0d4b0d98f3c77849699f88 "Department of Immunology" . _:N7524ff1932654eeda48f2fd928c06279 . _:Nc0b112c6ee0d4b0d98f3c77849699f88 . _:Nf2f4754f1ed5496d9ff148dfb22db3e7 . _:N29e49e15811b490fac496430506e98aa . _:N29e49e15811b490fac496430506e98aa "iVar v. 1.2.2" . _:Nf2f4754f1ed5496d9ff148dfb22db3e7 "SARS-CoV-2/human/USA/SEARCH-1677-SAN/2020" . "MT322423.1" . _:N81a23d1b77f84db89c7db0be9bbc7672 . _:N81a23d1b77f84db89c7db0be9bbc7672 "Paden,C.R." . _:N9c0bc22378074665b93f2bc3cc35b62e . _:N9c0bc22378074665b93f2bc3cc35b62e "MT262899.1" . _:N9c0bc22378074665b93f2bc3cc35b62e "5' sequence is the sequencing primer used" . _:Na318be5c78c14189b8a62749aa7c3400 . _:N7f21501a8f3f4583a31f69f54d5f0c33 . _:N81a23d1b77f84db89c7db0be9bbc7672 "Tao,Y." . _:N81a23d1b77f84db89c7db0be9bbc7672 "Zhang,J." . _:N81a23d1b77f84db89c7db0be9bbc7672 "Uehara,A." . _:Na318be5c78c14189b8a62749aa7c3400 . _:Ndd2d40628d844632805c1672b984a902 . _:Na318be5c78c14189b8a62749aa7c3400 . _:N81a23d1b77f84db89c7db0be9bbc7672 "Russell,D." . _:N81a23d1b77f84db89c7db0be9bbc7672 "Tong,S." . _:N81a23d1b77f84db89c7db0be9bbc7672 "Hiatt,B." . _:Na318be5c78c14189b8a62749aa7c3400 "minimap v. 2.17; Sequencher v. 5.4.6" . _:N9c0bc22378074665b93f2bc3cc35b62e . _:Na318be5c78c14189b8a62749aa7c3400 "20.0"^^ . _:N9c0bc22378074665b93f2bc3cc35b62e . _:Ndd2d40628d844632805c1672b984a902 . _:N9c0bc22378074665b93f2bc3cc35b62e . _:N7f21501a8f3f4583a31f69f54d5f0c33 "SARS-CoV-2/human/USA/WA-NH5/2020" . _:N81a23d1b77f84db89c7db0be9bbc7672 "Li,Y." . _:N9c0bc22378074665b93f2bc3cc35b62e . _:N81a23d1b77f84db89c7db0be9bbc7672 "Wang,H." . _:N7f21501a8f3f4583a31f69f54d5f0c33 . _:N81a23d1b77f84db89c7db0be9bbc7672 "Queen,K." . _:N81a23d1b77f84db89c7db0be9bbc7672 "Jacobs,J." . _:N81a23d1b77f84db89c7db0be9bbc7672 "Gant,J." . _:N9c0bc22378074665b93f2bc3cc35b62e "2020-03-13" . "SRR11858003" . _:Nae937a601c524d829c213bc610d620f5 "Virginia Division of Consolidated Laboratory Services Sequencing Submission Group" . _:Nf0723833ff7645ed9ce9ed1bb3a0060a . _:Nf0723833ff7645ed9ce9ed1bb3a0060a "2020-04-15" . _:N16e0c3479cf04bd1a9b8ec75907d47c7 . _:Nf0723833ff7645ed9ce9ed1bb3a0060a "Virginia DCLS" . _:Nf0723833ff7645ed9ce9ed1bb3a0060a . _:Nae937a601c524d829c213bc610d620f5 "Lauren.turner@dgs.virginia.gov" . _:Nf0723833ff7645ed9ce9ed1bb3a0060a . _:Nae937a601c524d829c213bc610d620f5 "Virginia Division of Consolidated Laboratories" . _:Nd89e9f80f61c41008042be81d2980527 "SARS-CoV-2/human/USA/VA-DCLS-0259/2020" . _:Nd89e9f80f61c41008042be81d2980527 . _:Nd89e9f80f61c41008042be81d2980527 . _:N2f348cfff0dd4b2992d1f375d5c96876 . _:N16e0c3479cf04bd1a9b8ec75907d47c7 "LIBRARY_STRATEGY: AMPLICON;" . _:Nae937a601c524d829c213bc610d620f5 "Department of General Services Division of Consolidated Laboratory Services; Virginia Division of Consolidated Laboratory Services Sequencing Submission Group; 500 North 5th Street; Richmond; VA; USA; Postal code 23219" . _:Nae937a601c524d829c213bc610d620f5 "SRA1080369" . _:Nae937a601c524d829c213bc610d620f5 . _:Nae937a601c524d829c213bc610d620f5 "Lauren Senty Turner" . _:Nf0723833ff7645ed9ce9ed1bb3a0060a "SRR11858003" . _:N16e0c3479cf04bd1a9b8ec75907d47c7 . _:N2f348cfff0dd4b2992d1f375d5c96876 . _:Nf0723833ff7645ed9ce9ed1bb3a0060a "The 'collection_date' is estimated (the original date was: 2020-04)" . _:Nae937a601c524d829c213bc610d620f5 "PRJNA625551" . "MT627430.1" . _:Nc1783f63a0b74affa3ad283a5016bd0c . _:N0f62f1bb19774ccea4e37af21ac0683e . _:N9fa4c6a2aa964f60aaf6e40701b1a98a . _:Nbfd7b2336b5944fcb07b9103e9d17f71 . _:N9fa4c6a2aa964f60aaf6e40701b1a98a "Department of Medicine, CZ Biohub, UCSF, 499 Illinois St, San Francisco, CA 94158, USA" . _:N0f62f1bb19774ccea4e37af21ac0683e "MT628146.1" . _:N0f62f1bb19774ccea4e37af21ac0683e . _:Nbfd7b2336b5944fcb07b9103e9d17f71 . _:Nc1783f63a0b74affa3ad283a5016bd0c . _:N9fa4c6a2aa964f60aaf6e40701b1a98a "CZB Cliahub Consortium,C.C.C." . _:N0f62f1bb19774ccea4e37af21ac0683e . _:N0f62f1bb19774ccea4e37af21ac0683e . _:N4f58dd1eb71e4838a34a00a1dd861155 . _:N4f58dd1eb71e4838a34a00a1dd861155 . _:N9fa4c6a2aa964f60aaf6e40701b1a98a "Division of Infectious Diseases" . _:N0f62f1bb19774ccea4e37af21ac0683e . _:N4f58dd1eb71e4838a34a00a1dd861155 "minimap2 v. 2.17; ivar v. 1.2" . _:N0f62f1bb19774ccea4e37af21ac0683e "2020-03-28" . _:Nbfd7b2336b5944fcb07b9103e9d17f71 "SARS-CoV-2/human/USA/CA-CZB-1443/2020" . "MT451790.1" . _:N62f95a01468a45da9f4cd628139698d2 . _:N73a5f0c21ba545029b8a34d8d9baa418 "Horan,K." . _:N73a5f0c21ba545029b8a34d8d9baa418 "Sait,M." . _:N73a5f0c21ba545029b8a34d8d9baa418 "Lane,C.R." . _:N62f95a01468a45da9f4cd628139698d2 . _:N62f95a01468a45da9f4cd628139698d2 . _:N73a5f0c21ba545029b8a34d8d9baa418 "Caly,L." . _:N73a5f0c21ba545029b8a34d8d9baa418 "Easton,M." . _:N73a5f0c21ba545029b8a34d8d9baa418 "Ballard,S.A." . _:N73a5f0c21ba545029b8a34d8d9baa418 "Howden,B.P." . _:Nc7d12167f10e4415b6c2d74ff4c4c00f . _:Ne407ff59610b4f48abb9924319fee0e1 . _:N73a5f0c21ba545029b8a34d8d9baa418 "Druce,J." . _:N73a5f0c21ba545029b8a34d8d9baa418 "Seemann,T." . _:Ne407ff59610b4f48abb9924319fee0e1 . _:Nc7d12167f10e4415b6c2d74ff4c4c00f . _:N73a5f0c21ba545029b8a34d8d9baa418 "Catton,M." . _:Ne407ff59610b4f48abb9924319fee0e1 "minimap2 v. 2.17-r941; samtools v. 1.10; ivar v. 1.2.1" . _:N3bdf09cb35544ff69c74347296c3141c . _:N73a5f0c21ba545029b8a34d8d9baa418 "Schultz,M.B." . _:Ne407ff59610b4f48abb9924319fee0e1 "3000.0"^^ . _:N73a5f0c21ba545029b8a34d8d9baa418 "van Diemen,A." . _:N73a5f0c21ba545029b8a34d8d9baa418 "Alpren,C." . _:N3bdf09cb35544ff69c74347296c3141c "SARS-CoV-2/human/AUS/VIC1186/2020" . _:N73a5f0c21ba545029b8a34d8d9baa418 "Williamson,D.A." . _:N73a5f0c21ba545029b8a34d8d9baa418 "Hoang,T." . _:N3bdf09cb35544ff69c74347296c3141c . _:N73a5f0c21ba545029b8a34d8d9baa418 "Sutton,B." . _:N73a5f0c21ba545029b8a34d8d9baa418 . _:N73a5f0c21ba545029b8a34d8d9baa418 "Sherry,N.L." . _:N73a5f0c21ba545029b8a34d8d9baa418 "Dougal,S." . _:N62f95a01468a45da9f4cd628139698d2 "2020-04-11" . _:N73a5f0c21ba545029b8a34d8d9baa418 "Duchene,S." . _:N73a5f0c21ba545029b8a34d8d9baa418 "Stinear,T.P." . _:N73a5f0c21ba545029b8a34d8d9baa418 "Goncalves da Silva,A." . _:N62f95a01468a45da9f4cd628139698d2 "MT451790.1" . "MT598174.1" . _:Ndda620b0a68d49dc9c3bad836082f951 "MT598174.1" . _:Nf32ca7d6b0804ee89bb9d95e3627a724 . _:Ndda620b0a68d49dc9c3bad836082f951 . _:Nb7ec17d35d2f4cbe91311265c6fc79fb . _:N46a71a3a87eb404c96bfd9ba257e38f4 "The Scripps Research Institute, 10550 N Torrey Pines Rd, San Diego, CA 92122, USA" . _:N3a85ea37adab4d24813dd8cdae65e59d "SARS-CoV-2/human/USA/SEARCH-0017-SAN/2020" . _:N46a71a3a87eb404c96bfd9ba257e38f4 . _:N46a71a3a87eb404c96bfd9ba257e38f4 "SEARCH Alliance,S.D." . _:Ndda620b0a68d49dc9c3bad836082f951 "2020-03-24" . _:Ndda620b0a68d49dc9c3bad836082f951 . _:Ndda620b0a68d49dc9c3bad836082f951 . _:Nf32ca7d6b0804ee89bb9d95e3627a724 . _:Ndda620b0a68d49dc9c3bad836082f951 . _:N3a85ea37adab4d24813dd8cdae65e59d . _:Nb7ec17d35d2f4cbe91311265c6fc79fb . _:Nf32ca7d6b0804ee89bb9d95e3627a724 "iVar v. 1.2" . _:N46a71a3a87eb404c96bfd9ba257e38f4 "Department of Immunology" . _:N3a85ea37adab4d24813dd8cdae65e59d . "MT520187.1" . _:N21b9f7be343b41808ac58020af88436a "Pierce,V." . _:N21b9f7be343b41808ac58020af88436a . _:N0e63487296cd447b867fd9d0e36192b8 "2020-04-07" . _:N21b9f7be343b41808ac58020af88436a "Flowers,K." . _:N21b9f7be343b41808ac58020af88436a "Siddle,K.J." . _:Nb087f0ad2244444ab465d5615044f563 "2092.015423"^^ . _:N21b9f7be343b41808ac58020af88436a "Adams,G." . _:N21b9f7be343b41808ac58020af88436a "Lemieux,J.E." . _:N21b9f7be343b41808ac58020af88436a "Lin,A.E." . _:Nb087f0ad2244444ab465d5615044f563 . _:N21b9f7be343b41808ac58020af88436a "Slater,D." . _:N21b9f7be343b41808ac58020af88436a "Gnirke,A." . _:N0e63487296cd447b867fd9d0e36192b8 "MT520187.1" . _:N21b9f7be343b41808ac58020af88436a "Gallagher,G." . _:N21b9f7be343b41808ac58020af88436a "Harris,J." . _:Nb087f0ad2244444ab465d5615044f563 "https://github.com/broadinstitute/viral-pipelines/blob/master/pipes/WDL/workflows/assemble_refbased.wdl v. 2.0.21.5-rc6" . _:N21b9f7be343b41808ac58020af88436a "Chaluvadi,S." . _:N0e63487296cd447b867fd9d0e36192b8 . _:N502a6aa31d02465cb40d403c3fa40ca4 . _:N21b9f7be343b41808ac58020af88436a "Carter,A." . _:N0e63487296cd447b867fd9d0e36192b8 . _:N21b9f7be343b41808ac58020af88436a "Rudy,M." . _:N21b9f7be343b41808ac58020af88436a "Park,D.J." . _:N21b9f7be343b41808ac58020af88436a "Chapman,S.B." . _:N0e63487296cd447b867fd9d0e36192b8 . _:N21b9f7be343b41808ac58020af88436a "Bauer,M." . _:N21b9f7be343b41808ac58020af88436a "Gladden-Young,A." . _:N21b9f7be343b41808ac58020af88436a "Reilly,S." . _:N988091dbc27c4515a504087e426fea99 "SARS-CoV-2/human/USA/MA_MGH_00708/2020" . _:N502a6aa31d02465cb40d403c3fa40ca4 . _:N21b9f7be343b41808ac58020af88436a "DeRuff,K." . _:N21b9f7be343b41808ac58020af88436a "Ryan,E." . _:N21b9f7be343b41808ac58020af88436a "Turbett,S." . _:N21b9f7be343b41808ac58020af88436a "Cerrato,F." . _:N21b9f7be343b41808ac58020af88436a "Branda,J." . _:Nb087f0ad2244444ab465d5615044f563 . _:N21b9f7be343b41808ac58020af88436a "LaRocque,R." . _:N21b9f7be343b41808ac58020af88436a "Rosenberg,E." . _:N21b9f7be343b41808ac58020af88436a "Normandin,E." . _:N988091dbc27c4515a504087e426fea99 . _:N0e63487296cd447b867fd9d0e36192b8 . _:N988091dbc27c4515a504087e426fea99 . _:N21b9f7be343b41808ac58020af88436a "Loreth,C." . _:N21b9f7be343b41808ac58020af88436a "Tomkins-Tinch,C." . _:N21b9f7be343b41808ac58020af88436a "Birren,B.W." . _:N21b9f7be343b41808ac58020af88436a "Smole,S." . _:N21b9f7be343b41808ac58020af88436a "Lagerborg,K." . _:N21b9f7be343b41808ac58020af88436a "Anahtar,M." . _:N21b9f7be343b41808ac58020af88436a "MacInnis,B.L." . _:N21b9f7be343b41808ac58020af88436a "Neumann,A." . _:N0e63487296cd447b867fd9d0e36192b8 "Massachusetts General Hospital" . _:N21b9f7be343b41808ac58020af88436a "Shaw,B." . _:N21b9f7be343b41808ac58020af88436a "Cusick,C." . _:N21b9f7be343b41808ac58020af88436a "Sabeti,P.C." . "MT577632.1" . _:N47a36b8e17554b6baa1a5d0fb06d850f . _:N640cab1def0a4b68bd66b4d77b815e45 "SARS-CoV-2/human/USA/FL-BPHL-0076/2020" . _:N4f26993e69a74a7bb846d7fe28095100 . _:Nadcf24b0d4e94d92b6820084c7acf9ae "Blanton,J." . _:Nbcef5517302e429a93c7515849b965fb . _:Nbcef5517302e429a93c7515849b965fb . _:Nbcef5517302e429a93c7515849b965fb "MT577632.1" . _:N640cab1def0a4b68bd66b4d77b815e45 . _:Nbcef5517302e429a93c7515849b965fb . _:Nadcf24b0d4e94d92b6820084c7acf9ae "Molecular" . _:Nadcf24b0d4e94d92b6820084c7acf9ae "Florida Bureau of Public Health Laboratories, 1217 N. Pearl Street, Jacksonville, FL 32202, USA" . _:Nadcf24b0d4e94d92b6820084c7acf9ae "Schmedes,S." . _:Nbcef5517302e429a93c7515849b965fb "2020-04-29" . _:N47a36b8e17554b6baa1a5d0fb06d850f "bwa v. 0.7.17; ivar v. 1.2.2" . _:N47a36b8e17554b6baa1a5d0fb06d850f . _:Nadcf24b0d4e94d92b6820084c7acf9ae . _:N4f26993e69a74a7bb846d7fe28095100 . _:N640cab1def0a4b68bd66b4d77b815e45 . "MT461657.1" . _:Na8628ba970df424d9cf367531e5f444e "Greninger,A." . _:N0871002af23348d19fe5ce517daec03c . _:Ne343b7022ab54c118a6b6869526ff733 . _:Ne343b7022ab54c118a6b6869526ff733 "SARS-CoV-2/human/USA/WA-UW-6546/2020" . _:N06fe00dd03894a2b99c084fe45d9a429 "2020-04-04" . _:Na8628ba970df424d9cf367531e5f444e "Laboratory Medicine" . _:Na8628ba970df424d9cf367531e5f444e "University of Washington, 1100 Fairview Ave N, PO Box 19024, E5-110, Seattle, WA 98109, USA" . _:N6ecf8bf11ba44866b2101f612ebb19c2 . _:N0871002af23348d19fe5ce517daec03c . _:Na8628ba970df424d9cf367531e5f444e . _:N06fe00dd03894a2b99c084fe45d9a429 "MT461657.1" . _:N06fe00dd03894a2b99c084fe45d9a429 . _:N06fe00dd03894a2b99c084fe45d9a429 . _:N06fe00dd03894a2b99c084fe45d9a429 . _:Ne343b7022ab54c118a6b6869526ff733 . _:N06fe00dd03894a2b99c084fe45d9a429 . _:Na8628ba970df424d9cf367531e5f444e "Roychoudhury,P." . _:N06fe00dd03894a2b99c084fe45d9a429 . _:N6ecf8bf11ba44866b2101f612ebb19c2 . _:N6ecf8bf11ba44866b2101f612ebb19c2 "custom pipeline v. 2020-03" . _:Na8628ba970df424d9cf367531e5f444e "Jerome,K." . "MT358727.1" . _:Ncba9a88f96a545058429f658c45ecfd7 "University of Washington, 1100 Fairview Ave N, PO Box 19024, E5-110, Seattle, WA 98109, USA" . _:N4a984956d5334e3787e08f6d0fb4652c . _:N74a9ec4fdf78417e97f3b090cd622b1c . _:Ncba9a88f96a545058429f658c45ecfd7 "Jerome,K." . _:Ncba9a88f96a545058429f658c45ecfd7 . _:N9473bd5b6dd54559b751c237339ced74 . _:Ncba9a88f96a545058429f658c45ecfd7 "Roychoudhury,P." . _:N74a9ec4fdf78417e97f3b090cd622b1c . _:N4a984956d5334e3787e08f6d0fb4652c . _:N9473bd5b6dd54559b751c237339ced74 . _:N9473bd5b6dd54559b751c237339ced74 . _:N27c6c201ceba44e2a72903a8b84be288 . _:N27c6c201ceba44e2a72903a8b84be288 . _:N9473bd5b6dd54559b751c237339ced74 "MT358727.1" . _:Ncba9a88f96a545058429f658c45ecfd7 "Laboratory Medicine" . _:N9473bd5b6dd54559b751c237339ced74 . _:N74a9ec4fdf78417e97f3b090cd622b1c "SARS-CoV-2/human/USA/WA-UW-3963/2020" . _:Ncba9a88f96a545058429f658c45ecfd7 "Greninger,A." . _:N4a984956d5334e3787e08f6d0fb4652c "custom pipeline v. 2020-03" . _:N9473bd5b6dd54559b751c237339ced74 "2020-03-30" . _:N9473bd5b6dd54559b751c237339ced74 . "MT827214.1" . _:Ne486b76e085b4aae9a44278305e49d54 "SARS-CoV-2/human/USA/MD-MDH-0048/2020" . _:N3026fc6c55ac4c65ab209cb90c59751a "CSL" . _:Ne214edb672c04acea280e19cb3071dc0 "MT827214.1" . _:Ne214edb672c04acea280e19cb3071dc0 . _:Nbf42080bccc5498ea1df9a5a4e8aa307 "CLC Genomics v. 20" . _:Ne214edb672c04acea280e19cb3071dc0 . _:N821ab9d2ab18467e8e7ca3756b37f8f9 . _:N821ab9d2ab18467e8e7ca3756b37f8f9 . _:Ne486b76e085b4aae9a44278305e49d54 . _:Ne214edb672c04acea280e19cb3071dc0 "2020-04-12" . _:Nbf42080bccc5498ea1df9a5a4e8aa307 . _:N3026fc6c55ac4c65ab209cb90c59751a . _:Ne486b76e085b4aae9a44278305e49d54 . _:Ne214edb672c04acea280e19cb3071dc0 . _:N3026fc6c55ac4c65ab209cb90c59751a "Keller,E." . _:N3026fc6c55ac4c65ab209cb90c59751a "Maryland Department of Health, 1, 1, MD 1, USA" . _:Ne214edb672c04acea280e19cb3071dc0 . _:Nbf42080bccc5498ea1df9a5a4e8aa307 . "MT012098.1" . _:N29ad508975ae49fc98faa188325b16ba . _:Nedc810fda11145b6bff9cfbfa7adbbf3 . _:Nedc810fda11145b6bff9cfbfa7adbbf3 . _:N4a80301fee854040bf4289411064d5b8 . _:N29ad508975ae49fc98faa188325b16ba . _:N4a80301fee854040bf4289411064d5b8 "Kallio-Kokko,H." . _:N15e8803b9ad6400eb7f4fc9d0a26d34f "20.0"^^ . _:N15e8803b9ad6400eb7f4fc9d0a26d34f "Megahit v. 1.1.1.3; BWA-MEM v. 0.7.17" . _:N74773778d804465d839dfbb1a23eca2a . _:N4a80301fee854040bf4289411064d5b8 "Peltola,J." . _:Nedc810fda11145b6bff9cfbfa7adbbf3 "nCoV-FIN-29-Jan-2020" . _:N15e8803b9ad6400eb7f4fc9d0a26d34f . _:N74773778d804465d839dfbb1a23eca2a "2020-01-29" . _:N15e8803b9ad6400eb7f4fc9d0a26d34f . _:N4a80301fee854040bf4289411064d5b8 "Vapalahti,O." . _:N4a80301fee854040bf4289411064d5b8 "Broas,M." . _:N4a80301fee854040bf4289411064d5b8 "Smura,T." . _:N74773778d804465d839dfbb1a23eca2a . _:N74773778d804465d839dfbb1a23eca2a "MT020781.2" . _:N74773778d804465d839dfbb1a23eca2a . _:N4a80301fee854040bf4289411064d5b8 "Kuivanen,S." . "MT451042.1" . _:N0fb24d3ae8d043d5aaba7a32f9459df7 . _:N13bb39c60b1f4f5aab62da01e6d5d6fa . _:Naacca19cc7fe409d8fe7bc4d078930b9 . _:N0fb24d3ae8d043d5aaba7a32f9459df7 "Virginia Division of Consolidated Laboratory Services Sequencing Submission Group, 500 North 5th Street, Richmond, VA 23219, USA" . _:N948c3b6f09224caa9cebd5cf3f16e9ba . _:N13bb39c60b1f4f5aab62da01e6d5d6fa "The 'collection_date' is estimated (the original date was: 2020-04)" . _:N948c3b6f09224caa9cebd5cf3f16e9ba . _:N13bb39c60b1f4f5aab62da01e6d5d6fa "MT609570.1" . _:Nf8458f20b0af417784f7d9840a0c2148 "SARS-CoV-2/human/USA/VA-DCLS-0304/2020" . _:Nf8458f20b0af417784f7d9840a0c2148 . _:Naacca19cc7fe409d8fe7bc4d078930b9 . _:N948c3b6f09224caa9cebd5cf3f16e9ba "minimap2 v. 2.17; ivar v. 1.1" . _:N0fb24d3ae8d043d5aaba7a32f9459df7 "Fink,L." . _:N13bb39c60b1f4f5aab62da01e6d5d6fa "2020-04-15" . _:N0fb24d3ae8d043d5aaba7a32f9459df7 "Department of General Services Division of Consolidated Laboratory Services" . _:N13bb39c60b1f4f5aab62da01e6d5d6fa . _:Nf8458f20b0af417784f7d9840a0c2148 . _:N13bb39c60b1f4f5aab62da01e6d5d6fa . "MT886446.1" . _:N1fb5f0afd362472bb1400a767a10da64 "MT886446.1" . _:N1fb5f0afd362472bb1400a767a10da64 . _:Ne2d817d57dc24aa1afd8d27971cd710f "Epidemiology of Microbial Diseases" . _:N39161a51e91f460f86fa3277c2f5b73c . _:Ncdd2fdb856ee4877b375ee71b6f49187 . _:Naf82c81ce6ed43178be580b8dcaefa7d . _:N39161a51e91f460f86fa3277c2f5b73c "Artic Network (bwa, SAMtools, nanopolish) v. 2020" . _:N1fb5f0afd362472bb1400a767a10da64 . _:N1fb5f0afd362472bb1400a767a10da64 . _:N1fb5f0afd362472bb1400a767a10da64 . _:N1fb5f0afd362472bb1400a767a10da64 "2020-05-12" . _:N39161a51e91f460f86fa3277c2f5b73c . _:Ne2d817d57dc24aa1afd8d27971cd710f "Fauver,J.R." . _:Ne2d817d57dc24aa1afd8d27971cd710f "Yale School of Public Health, 60 College Street, New Haven, CT 06510, USA" . _:Ncdd2fdb856ee4877b375ee71b6f49187 . _:Naf82c81ce6ed43178be580b8dcaefa7d . _:Ncdd2fdb856ee4877b375ee71b6f49187 "SARS-CoV-2/human/USA/Yale-333/2020" . _:Ne2d817d57dc24aa1afd8d27971cd710f . "MT412202.1" . _:N6ad9c0fad4704cc4a753cdbc22a317d2 "Sridhar,S.H." . _:N6ad9c0fad4704cc4a753cdbc22a317d2 "Paniz-Mondolfi,A." . _:N9a2b14b38381458d88fad7de39355425 . _:N6ad9c0fad4704cc4a753cdbc22a317d2 "Garcia-Sastre,A." . _:N6ad9c0fad4704cc4a753cdbc22a317d2 "Obla,A." . _:N6ad9c0fad4704cc4a753cdbc22a317d2 "Sebra,R." . _:N6ad9c0fad4704cc4a753cdbc22a317d2 "Aberg,J." . _:N8105232d8b204f26a316831290eb924f . _:N3961c374076b4b96ba32d3e4b7d8fba7 . _:N6ad9c0fad4704cc4a753cdbc22a317d2 "Hernandez,M." . _:N6ad9c0fad4704cc4a753cdbc22a317d2 "Smith,M." . _:N8105232d8b204f26a316831290eb924f . _:N6ad9c0fad4704cc4a753cdbc22a317d2 "Sullivan,M." . _:N9a2b14b38381458d88fad7de39355425 "MT371002.1" . _:N9a2b14b38381458d88fad7de39355425 "passage_history: sequence was derived directly from the original sample material" . _:N6ad9c0fad4704cc4a753cdbc22a317d2 "Simon,V." . _:N6ad9c0fad4704cc4a753cdbc22a317d2 "Dutta,J." . _:N6ad9c0fad4704cc4a753cdbc22a317d2 "Soto,J." . _:N6ad9c0fad4704cc4a753cdbc22a317d2 "van Bakel,H." . _:N6ad9c0fad4704cc4a753cdbc22a317d2 "Fabre,S." . _:N6ad9c0fad4704cc4a753cdbc22a317d2 "Albrecht,R." . _:N6ad9c0fad4704cc4a753cdbc22a317d2 "Khan,Z." . _:N6ad9c0fad4704cc4a753cdbc22a317d2 . _:N9a2b14b38381458d88fad7de39355425 . _:N84926d34293a49cd855d10d798770490 . _:N6ad9c0fad4704cc4a753cdbc22a317d2 "Wang,Y.C." . _:N6ad9c0fad4704cc4a753cdbc22a317d2 "Sordillo,E." . _:N8105232d8b204f26a316831290eb924f "Minimap2, Pilon v. 2.17-r941, v.1.23" . _:N6ad9c0fad4704cc4a753cdbc22a317d2 "Patel,G." . _:N6ad9c0fad4704cc4a753cdbc22a317d2 "Gonzalez-Reiche,A.S." . _:N6ad9c0fad4704cc4a753cdbc22a317d2 "Krammer,F." . _:N6ad9c0fad4704cc4a753cdbc22a317d2 "Polanco,J." . _:N9a2b14b38381458d88fad7de39355425 . _:N84926d34293a49cd855d10d798770490 . _:N3961c374076b4b96ba32d3e4b7d8fba7 . _:N6ad9c0fad4704cc4a753cdbc22a317d2 "Gitman,M." . _:N6ad9c0fad4704cc4a753cdbc22a317d2 "Albuquerque,B." . _:N9a2b14b38381458d88fad7de39355425 "2020-03-22" . _:N3961c374076b4b96ba32d3e4b7d8fba7 "SARS-CoV-2/human/USA/NY-PV09200/2020" . _:N6ad9c0fad4704cc4a753cdbc22a317d2 "Liu,W." . _:N9a2b14b38381458d88fad7de39355425 . _:N6ad9c0fad4704cc4a753cdbc22a317d2 "Miorin,L." . "MT834064.1" . _:Na04128b74a4c4887a3ba7fffd134e1ba "Thompson,M." . _:Na04128b74a4c4887a3ba7fffd134e1ba "Brandstetter,E." . _:N9edf8b2b8c3340a6bf1e69fe03b57f39 . _:Na04128b74a4c4887a3ba7fffd134e1ba "Pelle,B." . _:Na04128b74a4c4887a3ba7fffd134e1ba "Truong,M." . _:Na04128b74a4c4887a3ba7fffd134e1ba "Gautom,R." . _:Na04128b74a4c4887a3ba7fffd134e1ba "Lacombe,K." . _:N7ccaccf10f9f4e20b2037b1e11c35728 . _:Na04128b74a4c4887a3ba7fffd134e1ba "Richardson,M." . _:Na04128b74a4c4887a3ba7fffd134e1ba "Seattle Flu Study, 1959 NE Pacific Street, Seattle, WA 98195, USA" . _:Ndf36723f8676436bbf4bd5a0cde76170 . _:Na04128b74a4c4887a3ba7fffd134e1ba "Lutz,B.R." . _:Na04128b74a4c4887a3ba7fffd134e1ba "University of Washington Medical Center" . _:Na04128b74a4c4887a3ba7fffd134e1ba "Adler,A." . _:N9edf8b2b8c3340a6bf1e69fe03b57f39 . _:Na04128b74a4c4887a3ba7fffd134e1ba "Nickerson,D.A." . _:Na04128b74a4c4887a3ba7fffd134e1ba "Dykema,P." . _:Ndf36723f8676436bbf4bd5a0cde76170 . _:N9edf8b2b8c3340a6bf1e69fe03b57f39 "MT834064.1" . _:Na04128b74a4c4887a3ba7fffd134e1ba "Bedford,T." . _:Na04128b74a4c4887a3ba7fffd134e1ba "Boeckh,M." . _:Na04128b74a4c4887a3ba7fffd134e1ba "Shendure,J." . _:N7ccaccf10f9f4e20b2037b1e11c35728 . _:Na04128b74a4c4887a3ba7fffd134e1ba "Fay,K." . _:Na04128b74a4c4887a3ba7fffd134e1ba "Ilcisin,M." . _:Na04128b74a4c4887a3ba7fffd134e1ba "Frazar,C.D." . _:N70c92ff1b33947619077ccd9487da7ef "SARS-CoV-2/human/USA/WA-S1768/2020" . _:Na04128b74a4c4887a3ba7fffd134e1ba "Rieder,M.J." . _:Na04128b74a4c4887a3ba7fffd134e1ba "Hiatt,B." . _:N9edf8b2b8c3340a6bf1e69fe03b57f39 "2020-06-01" . _:Na04128b74a4c4887a3ba7fffd134e1ba "Han,P.D." . _:Na04128b74a4c4887a3ba7fffd134e1ba "Lee,J." . _:N9edf8b2b8c3340a6bf1e69fe03b57f39 . _:N70c92ff1b33947619077ccd9487da7ef . _:Na04128b74a4c4887a3ba7fffd134e1ba "Sibley,T.R." . _:Na04128b74a4c4887a3ba7fffd134e1ba . _:N70c92ff1b33947619077ccd9487da7ef . _:Na04128b74a4c4887a3ba7fffd134e1ba "Chu,H.Y." . _:Na04128b74a4c4887a3ba7fffd134e1ba "Lindquist,S." . _:Na04128b74a4c4887a3ba7fffd134e1ba "Starita,L.M." . _:Na04128b74a4c4887a3ba7fffd134e1ba "Englund,J.A." . _:Na04128b74a4c4887a3ba7fffd134e1ba "Melly,G." . _:Na04128b74a4c4887a3ba7fffd134e1ba "Famulare,M." . _:Ndf36723f8676436bbf4bd5a0cde76170 "https://github.com/seattleflu/assembly v. June-2020" . _:Na04128b74a4c4887a3ba7fffd134e1ba "Wolf,C.R." . _:N9edf8b2b8c3340a6bf1e69fe03b57f39 . "MT252792.1" . _:N988b4896fcb7443a96bbde4d874d15c3 "SARS-CoV-2/human/USA/PC00101P/2020" . _:N46eb7b211cdf4f22a689b5c2d220a3c4 "2020-03-11" . _:N6052b653fd0548fea3bb3a3304c603b4 "Zeller,M." . _:N988b4896fcb7443a96bbde4d874d15c3 . _:N46eb7b211cdf4f22a689b5c2d220a3c4 . _:N6052b653fd0548fea3bb3a3304c603b4 "Department of Immunology" . _:Ne57ca47ae3754c93b83574b2659e0a8a . _:N6052b653fd0548fea3bb3a3304c603b4 "Andersen,K." . _:N6052b653fd0548fea3bb3a3304c603b4 "Anderson,C." . _:N6052b653fd0548fea3bb3a3304c603b4 "Nicholson,L." . _:N6052b653fd0548fea3bb3a3304c603b4 "Klitting,R." . _:N6c302c33a5f64c5d92d54cf39c099d8f . _:N6052b653fd0548fea3bb3a3304c603b4 "Gangavarapu,K." . _:N46eb7b211cdf4f22a689b5c2d220a3c4 . _:N6c302c33a5f64c5d92d54cf39c099d8f "ivar v. 1.1" . _:N46eb7b211cdf4f22a689b5c2d220a3c4 "MT192765.1" . _:N6052b653fd0548fea3bb3a3304c603b4 "Spencer,E." . _:N6c302c33a5f64c5d92d54cf39c099d8f . _:N988b4896fcb7443a96bbde4d874d15c3 . _:Ne57ca47ae3754c93b83574b2659e0a8a . _:N6052b653fd0548fea3bb3a3304c603b4 . _:N6052b653fd0548fea3bb3a3304c603b4 "The Scripps Research Institute, 10550 N Torrey Pines Rd, La Jolla, CA 92037-1000, USA" . _:N6c302c33a5f64c5d92d54cf39c099d8f "3516.0"^^ . _:N6052b653fd0548fea3bb3a3304c603b4 "Robles-Sikisaka,R." . _:N46eb7b211cdf4f22a689b5c2d220a3c4 . "SRR11597213" . _:N9b7c0568f8294e169da406fe1bd49688 . _:N954157b4cbdb4d73b316e242cc709043 "SH0123" . _:N43989ac7235f4b12851c16e6d078fb14 "2020-02-14" . _:N43989ac7235f4b12851c16e6d078fb14 . _:N8e2dc9292b2e4248ae1c4e3473b52420 "2. National Research Center for Translational Medicine (Shanghai); Ruijin Hospital Affiliated to Shanghai Jiao Tong University School of Medicine; 197 RuiJin Er Rd; Shanghai; China; Postal code 200025" . _:N8e2dc9292b2e4248ae1c4e3473b52420 "SRA1068259" . _:N8e2dc9292b2e4248ae1c4e3473b52420 "PRJNA627662" . _:N43989ac7235f4b12851c16e6d078fb14 . _:N8e2dc9292b2e4248ae1c4e3473b52420 "2. National Research Center for Translational Medicine (Shanghai); Ruijin Hospital Affiliated to Shanghai Jiao Tong University School of Medicine; 197 RuiJin Er Rd; Shanghai; China; Postal code 200025" . _:N43989ac7235f4b12851c16e6d078fb14 "Shanghai Public Health Clinical Center, Fudan University, Shanghai, China" . _:N43989ac7235f4b12851c16e6d078fb14 "SRR11597213" . _:N8e2dc9292b2e4248ae1c4e3473b52420 "YUN TAN" . _:N8e2dc9292b2e4248ae1c4e3473b52420 . _:N8e2dc9292b2e4248ae1c4e3473b52420 "steventan@sjtu.edu.cn" . _:N954157b4cbdb4d73b316e242cc709043 . _:Nc3a23b6c44da44e19fff35d1fb6019df . _:N954157b4cbdb4d73b316e242cc709043 . _:N43989ac7235f4b12851c16e6d078fb14 . _:Nc3a23b6c44da44e19fff35d1fb6019df . _:N9b7c0568f8294e169da406fe1bd49688 . _:N8e2dc9292b2e4248ae1c4e3473b52420 "Ruijin Hospital Affiliated to Shanghai Jiao Tong University School of Medicine" . _:Nc3a23b6c44da44e19fff35d1fb6019df "LIBRARY_STRATEGY: AMPLICON;" . _:N8e2dc9292b2e4248ae1c4e3473b52420 "2. National Research Center for Translational Medi" . "MT461668.1" . _:N501d566159f1401a8ddd0085530a70cf "Greninger,A." . _:N3a534b3cc8f94420a25e4c65da5ead05 . _:N3a534b3cc8f94420a25e4c65da5ead05 . _:N501d566159f1401a8ddd0085530a70cf "Laboratory Medicine" . _:N19632100e5274654a8de47f8b80a79ae "custom pipeline v. 2020-03" . _:N3a534b3cc8f94420a25e4c65da5ead05 "MT461668.1" . _:N9bd518939b6e4cb892182e6e8728fe6f "SARS-CoV-2/human/USA/CT-UW-6576/2020" . _:N501d566159f1401a8ddd0085530a70cf "Roychoudhury,P." . _:N501d566159f1401a8ddd0085530a70cf "University of Washington, 1100 Fairview Ave N, PO Box 19024, E5-110, Seattle, WA 98109, USA" . _:N19632100e5274654a8de47f8b80a79ae . _:N9bd518939b6e4cb892182e6e8728fe6f . _:N9bd518939b6e4cb892182e6e8728fe6f . _:N3a534b3cc8f94420a25e4c65da5ead05 . _:N501d566159f1401a8ddd0085530a70cf "Jerome,K." . _:N19632100e5274654a8de47f8b80a79ae . _:N501d566159f1401a8ddd0085530a70cf . _:Nec760cc63fc645b6881a18d94c21c0fd . _:N3a534b3cc8f94420a25e4c65da5ead05 "2020-04-02" . _:Nec760cc63fc645b6881a18d94c21c0fd . _:N3a534b3cc8f94420a25e4c65da5ead05 . _:N3a534b3cc8f94420a25e4c65da5ead05 . "MT252760.1" . _:N2703396be0b148c2aedf473a3170b04a . _:N2703396be0b148c2aedf473a3170b04a . _:N77ac24bf17384f9d97f805cbefe2e151 "SARS-CoV-2/human/USA/WA-UW144/2020" . _:N1eb4f334b2c3430ba8f1643f70ce2295 "Greninger,A." . _:N77ac24bf17384f9d97f805cbefe2e151 . _:N1eb4f334b2c3430ba8f1643f70ce2295 "Roychoudhury,P." . _:N2703396be0b148c2aedf473a3170b04a . _:N2703396be0b148c2aedf473a3170b04a "The 'collection_date' is estimated (the original date was: 2020)" . _:N557b5f16d8694302839c537b9a8882a9 . _:N1eb4f334b2c3430ba8f1643f70ce2295 "University of Washington, 1100 Fairview Ave N, PO Box 19024, E5-110, Seattle, WA 98109, USA" . _:N1eb4f334b2c3430ba8f1643f70ce2295 "Laboratory Medicine" . _:Nee3045575279448aac7cf38f8140bac8 . _:Nee3045575279448aac7cf38f8140bac8 . _:N77ac24bf17384f9d97f805cbefe2e151 . _:N557b5f16d8694302839c537b9a8882a9 . _:N2703396be0b148c2aedf473a3170b04a "2020-01-15" . _:N1eb4f334b2c3430ba8f1643f70ce2295 . _:N1eb4f334b2c3430ba8f1643f70ce2295 "Jerome,K." . _:N2703396be0b148c2aedf473a3170b04a "MT252760.1" . _:Nee3045575279448aac7cf38f8140bac8 "custom pipeline v. 2020-03" . "MT632944.1" . _:N035b8f13f2d14f4c83842692fbfa5602 . _:Ne3e263d980e04eea8d0a2e2409b13a85 . _:N3aa9dda01e7a4c71bf8242f038777e70 . _:N035b8f13f2d14f4c83842692fbfa5602 "2020-05-11" . _:Nb63c9d87086049afb9df61d0ce416e07 "SARS-CoV-2/human/USA/CA-CZB-1549/2020" . _:N4ec7021e959f48ef9829e197b7753d8c "Department of Medicine, CZ Biohub, UCSF, 499 Illinois St, San Francisco, CA 94158, USA" . _:N3aa9dda01e7a4c71bf8242f038777e70 "minimap2 v. 2.17; ivar v. 1.2" . _:Nb63c9d87086049afb9df61d0ce416e07 . _:N035b8f13f2d14f4c83842692fbfa5602 . _:N035b8f13f2d14f4c83842692fbfa5602 "MT628217.1" . _:N035b8f13f2d14f4c83842692fbfa5602 . _:N035b8f13f2d14f4c83842692fbfa5602 . _:N4ec7021e959f48ef9829e197b7753d8c . _:Ne3e263d980e04eea8d0a2e2409b13a85 . _:N3aa9dda01e7a4c71bf8242f038777e70 . _:N4ec7021e959f48ef9829e197b7753d8c "Division of Infectious Diseases" . _:N035b8f13f2d14f4c83842692fbfa5602 . _:Nb63c9d87086049afb9df61d0ce416e07 . _:N4ec7021e959f48ef9829e197b7753d8c "CZB Cliahub Consortium,C.C.C." . "MT558663.1" . _:N371ec305967249c3abf25e20c89b744b "Karakasiliotis,I." . _:N52ad0ec43a1044a9a9af428e9f889ee5 . _:N99a3c19ed6344fe5b25312a78aededa0 "SARS-CoV-2/human/GRC/136_32338/2020" . _:N99a3c19ed6344fe5b25312a78aededa0 . _:N52ad0ec43a1044a9a9af428e9f889ee5 . _:N371ec305967249c3abf25e20c89b744b "Kassela,K." . _:N371ec305967249c3abf25e20c89b744b "Stavropoulou,A." . _:N99a3c19ed6344fe5b25312a78aededa0 . _:N371ec305967249c3abf25e20c89b744b "Dovrolis,N." . _:N59a54058f03345d7bba7615bae3a8be6 . _:N371ec305967249c3abf25e20c89b744b "Froukala,E." . _:N52ad0ec43a1044a9a9af428e9f889ee5 "MT459852.1" . _:N371ec305967249c3abf25e20c89b744b "Spanakis,N." . _:N371ec305967249c3abf25e20c89b744b "Bampali,M." . _:N371ec305967249c3abf25e20c89b744b "Democritus University of Thrace, Alexandroupolis, 68100, Department of Medicine, National and Kapodistrian University of Athens, University Campus, Athens 11527, Greece" . _:N52ad0ec43a1044a9a9af428e9f889ee5 "2020-03-11" . _:N384f007008c24f6bab605242ca1c78f2 . _:N371ec305967249c3abf25e20c89b744b "Veletza,S." . _:N384f007008c24f6bab605242ca1c78f2 . _:N59a54058f03345d7bba7615bae3a8be6 "Iterative Refinement Meta-Assembler (IRMA) v. v0.6.1" . _:N371ec305967249c3abf25e20c89b744b . _:N59a54058f03345d7bba7615bae3a8be6 . _:N371ec305967249c3abf25e20c89b744b "Tsakris,A." . _:N52ad0ec43a1044a9a9af428e9f889ee5 . _:N371ec305967249c3abf25e20c89b744b "Gatzidou,E." . _:N371ec305967249c3abf25e20c89b744b "Department of Medicine" .