---
title: 'Public Sequence Resource for COVID-19'
tags:
  - Sequencing
  - COVID
authors:
  - name: Pjotr Prins
    orcid: 0000-0002-8021-9162
    affiliation: 1
  - name: Peter Amstutz
    orcid: 0000
    affiliation: 2
  - name: Tazro Ohta
    orcid: 0000
    affiliation: 3
  - name: Thomas Liener
    orcid: 0000
    affiliation: 4
  - name: Erik Garrison
    orcid: 0000
    affiliation: 5
  - name: Michael R. Crusoe
    orcid: 0000-0002-2961-9670
    affiliation: 6, 2
  - name: Rutger Vos
    orcid: 0000
    affiliation: 7
  - Michael Heuer
    orcid: 0000
    affiliation: 8

affiliations:
  - name: Department of Genetics, Genomics and Informatics, The University of Tennessee Health Science Center, Memphis, TN, USA.
    index: 1
  - name: Curii, Boston, USA
    index: 2
  - name: Department of Computer Science, Faculty of Sciences, Vrije Universiteit Amsterdam, The Netherlands
    index: 6
date: 11 April 2020
bibliography: paper.bib
---

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# Introduction

As part of the one week COVID-19 Biohackathion 2020, we formed a
working group on creating a public sequence resource for Corona virus.


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## Cloud computing backend

Peter, Pjotr, MichaelC

## A command-line sequence uploader

Peter, Pjotr

## Metadata uploader

With Thomas

## FASTA to GFA workflow

Michael Heuer

## BAM to GFA workflow

Tazro & Erik

## Phylogeny app

With Rutger

## RDF app

Jerven?

## EBI app

?

# Discussion

Future work...

# References