#+TITLE: COVID-19 PubSeq (part 4)
#+AUTHOR: Pjotr Prins
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* Table of Contents                                                     :TOC:noexport:
 - [[#what-does-this-mean][What does this mean?]]
 - [[#where-can-i-find-the-workflows][Where can I find the workflows?]]
 - [[#modify-workflow][Modify Workflow]]

* What does this mean?

When someone uploads a SARS-CoV-2 sequence using one
of our tools (CLI or web-based) they add a sequence and some metadata
which triggers a rerun of our workflows.

* Where can I find the workflows?

Workflows are written in the common workflow language (CWL) and listed
on [[https://github.com/arvados/bh20-seq-resource/tree/master/workflows][github]]. PubSeq being an open project these workflows can be studied
and modified!

* Modify Workflow

/Work in progress!/