# INSTALLATION Other options for running this tool. ## GNU Guix ### Running the CLI uploader Another way to install this tool is inside a [GNU Guix Environment](https://guix.gnu.org/manual/en/html_node/Invoking-guix-environment.html), which can handle installing dependencies for you 1. **Set up and enter a Guix environment with the necessary dependencies.** After installing Guix run: ```sh guix environment -C guix --ad-hoc git python openssl python-pycurl nss-certs ``` 2. **Install the tool.** From there you can follow the [user installation instructions](#installation-with-pip3---user). In brief: ```sh pip3 install --user schema-salad arvados-python-client ``` Pip installed the following modules ``` arvados-python-client-2.0.1 ciso8601-2.1.3 future-0.18.2 google-api-python-client-1.6.7 httplib2-0.17.1 oauth2client-4.1.3 pyasn1-0.4.8 pyasn1-modules-0.2.8 rsa-4.0 ruamel.yaml-0.15.77 six-1.14.0 uritemplate-3.0.1 ws4py-0.5.1 ``` 3. Run the tool directly with ```sh guix environment guix --ad-hoc git python openssl python-pycurl python-magic nss-certs -- python3 bh20sequploader/main.py example/sequence.fasta example/metadata.yaml ``` ### Using the Web Uploader To run the web uploader in a GNU Guix environment/container ``` guix environment -C guix --ad-hoc git python python-flask python-pyyaml python-magic nss-certs --network openssl -- env FLASK_APP=bh20simplewebuploader/main.py flask run * Serving Flask app "bh20simplewebuploader/main.py" * Environment: production WARNING: This is a development server. Do not use it in a production deployment. Use a production WSGI server instead. * Debug mode: off * Running on http://127.0.0.1:5000/ (Press CTRL+C to quit) ``` WIP: add gunicorn container