Web Uploader for Public SARS-CoV-2 Sequence Resource

Disabled until we got everything wired up

Upload your SARS-CoV-2 sequence (FASTA or FASTQ formats) with metadata (JSONLD) to the public sequence resource. The upload will trigger a recompute with all available sequences into a Pangenome available for download! Your uploaded sequence will automatically be processed and incorporated into the public pangenome with metadata. All data is published under a Creative Commons 4.0 attribution license (CC-BY-4.0). You can take the published (GFA/RDF/FASTA) data and store it in a triple store for further processing. A free command line version of the uploader can be installed from source.



Note that by uploading your data you automatically agree to a CC-BY-4.0 license.


Make sure the metadata has submitter attribution details.


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ABOUT

This a public repository created at the COVID-19 BioHackathon that has a low barrier to entry for uploading sequence data using best practices. I.e., data is published with a creative commons 4.0 (CC-4.0) license with metadata using state-of-the art standards and, perhaps most importantly, providing standardized workflows that get triggered on upload, so that results are immediately available in standardized data formats. The repository will be maintained and expanded for the duration of the pandemic. To contribute data simply upload it! To contribute code and/or workflows see the project repository. For more information see the paper (WIP).


Source · Made for COVID-19-BH20 | For more information E-mail pjotr.public444 at thebird.nl