Web Uploader for Public SARS-CoV-2 Sequence Resource

Upload your SARS-CoV-2 sequence (FASTA or FASTQ formats) with metadata (JSONLD) to the public sequence resource. The upload will trigger a recompute with all available sequences into a Pangenome available for download! Your uploaded sequence will automatically be processed and incorporated into the public pangenome with metadata. All data is published under a Creative Commons 4.0 attribution license (CC-BY-4.0). You can take the published (GFA/RDF/FASTA) data and store it in a triple store for further processing. A free command line version of the uploader can be installed from source.

Select FASTA file of assembled genome (max 40K), or FASTQ of reads (max 50MB):

Select metadata submission method:
Upload metadata file Fill in metadata manually

Select JSON or YAML metadata file following this schema (Example 1, Example 2, max 1MB):

{{ record }} {% for record in fields %} {% if 'heading' in record %} {% if loop.index > 1 and 2 < 3 %}

{% endif %}

{% else %} {{ record['label'] }} {{ "*" if record['required'] else "" }} {% if 'ref_url' in record %} ? {% endif %} {% endif %} {% if loop.index == loop.length %}

{% endif %} {% endfor %}

Web Uploader for Public SARS-CoV-2 Sequence Resource

{{ record['heading'] }}