Other blog entries

Query metadata with SPARQL

We fetch sequence data and metadata. We query the metadata in multiple ways using SPARQL and onthologies

Submitting a sequence

We submit a sequence to the database. In this BLOG we fetch a sequence from GenBank and add it to the database.

Modify workflow

We modify a workflow to get new output

Modify metadata

We modify metadata for all to use! In this BLOG we add a field for a creative commons license.

Interacting with Arvados

We explore the Arvados command line and API

Prepare for uploading to EBI/ENA

Generate the files needed for uploading to EBI/ENA

REST API

Documentation for PubSeq REST API