<!DOCTYPE html> <html> {% include 'header.html' %} <body> {% include 'banner.html' %} {% include 'menu.html' %} {% if embed %} {{ embed|safe }} <hr> <h1>Other blog entries</h1> {% else %} {% include 'blurb.html' %} <h2>BLOG Entries:</h2> {% endif %} <section class="blog-entries"> <div class="blog-table"> <div class="blog-table-body"> <div class="blog-table-row"> <div class="blog-table-cell"> <a href="/blog?id=using-covid-19-pubseq-part1">Query metadata with SPARQL</a> </div> <div class="blog-table-cell"> We fetch sequence data and metadata. We query the metadata in multiple ways using SPARQL and onthologies </div> </div> <div class="blog-table-row"> <div class="blog-table-cell"> <a href="/blog?id=using-covid-19-pubseq-part3">Submitting a sequence</a> </div> <div class="blog-table-cell"> We submit a sequence to the database. In this BLOG we fetch a sequence from GenBank and add it to the database. </div> </div> <div class="blog-table-row"> <div class="blog-table-cell"> <a href="/blog?id=using-covid-19-pubseq-part4">Modify workflow</a> </div> <div class="blog-table-cell"> We modify a workflow to get new output </div> </div> <div class="blog-table-row"> <div class="blog-table-cell"> <a href="/blog?id=using-covid-19-pubseq-part5">Modify metadata</a> </div> <div class="blog-table-cell"> We modify metadata for all to use! In this BLOG we add a field for a creative commons license. </div> </div> <div class="blog-table-row"> <div class="blog-table-cell"> <a href="/blog?id=using-covid-19-pubseq-part2">Interacting with Arvados</a> </div> <div class="blog-table-cell"> We explore the Arvados command line and API </div> </div> <div class="blog-table-row"> <div class="blog-table-cell"> <a href="/blog?id=using-covid-19-pubseq-part6">Prepare for uploading to EBI/ENA</a> </div> <div class="blog-table-cell"> Generate the files needed for uploading to EBI/ENA </div> </div> <div class="blog-table-row"> <div class="blog-table-cell"> <a href="/apidoc">REST API</a> </div> <div class="blog-table-cell"> Documentation for PubSeq REST API </div> </div> </div> </div> </section> {% include 'footer.html' %} <script type="text/javascript"> let scriptRoot = {{ request.script_root|tojson|safe }}; // examples </script> </body> </html>