/* * Menu and navigation */ /* Toggle between adding and removing the "responsive" class to topnav * when the user clicks on the icon */ function myFunction() { var x = document.getElementById("myTopnav"); if (x.className === "topnav") { x.className += " responsive"; } else { x.className = "topnav"; } } let map = L.map( 'map', { center: [37.0902, -95.7129], // Default to U.S.A minZoom: 3, zoom: 0 }); L.tileLayer( 'http://{s}.tile.openstreetmap.org/{z}/{x}/{y}.png', { attribution: '© OpenStreetMap', subdomains: ['a','b','c'] }).addTo( map ); let markers = L.markerClusterGroup().addTo(map) function fetchAPI(apiEndPoint) { fetch(scriptRoot + apiEndPoint) .then(response => { return response.json(); }) .then(data => { console.log(data); markers.clearLayers(); document.getElementById("results").classList.remove("invisible"); document.getElementById("loader").classList.add("invisible"); if (!(apiEndPoint === "/api/getAllaccessions")) { for (let i = 0; i < data.length; i++) { let {"count": fastaCount, GPS, LocationLabel: label } = data[i]; let coordinates = GPS.split(" "); if (!(coordinates == null)) { let lat, lon; [lon, lat] = coordinates.map(parseFloat); let point = L.point() let marker = L.marker([lat, lon]); marker.bindPopup("" + label + "
" + "FastaCount: " +fastaCount); markers.addLayer(marker) }} } // Reload the map map.invalidateSize(); }); document.getElementById("results").classList.add("invisible"); document.getElementById("loader").classList.remove("invisible"); } // Copy from function above but now added as table instead of plain json function fetchAPIV2(apiEndPoint) { fetch(scriptRoot + apiEndPoint) .then(response => { return response.json(); }) .then(data => { console.log(data) htmlString="" // Depending on what we want to explore we'd have to call a different function ....? But how to Include that? for (var i=0; i" } htmlString=htmlString+"
"+data[i]["label"]+""+data[i]["count"]+"
" document.getElementById("table").innerHTML = htmlString }); document.getElementById("results").classList.add("invisible"); } let search = () => { let m = document.getElementById('search-input').value; fetchAPI(scriptRoot + "/api/getDetailsForSeq?seq=" + encodeURIComponent(m)); } let fetchCount = () => { fetchAPI("/api/getCount"); } let fetchSEQCountBySpecimen = () => { fetchAPIV2("/api/getSEQCountbySpecimenSource"); } let fetchSEQCountByLocation = () => { fetchAPIV2("/api/getSEQCountbyLocation"); } let fetchSEQCountByTech = () => { fetchAPIV2("/api/getSEQCountbytech"); } let fetchAllaccessions = () => { fetchAPI("/api/getAllaccessions"); }; let fetchCountByGPS = () => { fetchAPI("/api/getCountByGPS"); }; let fetchSEQCountbyLocation = () => { fetchAPIV2("/api/getSEQCountbyLocation"); }; let fetchSEQByLocation = () => { console.log("Missing - set parameter for request, retrieve data") }; let fetchSEQCountbyContinent = () => { fetchAPIV2("/api/getSEQCountbyContinent"); } /* * Make sure that only one of the manual metadata entry and metadata upload * form components is *actually* a child of the form element in the DOM. * * Because both make use of the "required" attribute, we can't get away with * just hiding the one we don't want the user to fill in. The hidden part will * still have possibly empty required fields and (some) browsers will * blocksubmission because of it. Moreover, the data (including file uploads) * from the hidden elements will still be sent to the server, which the user * may not expect. */ function setUploadMode() { // Make the upload form the one in use. uploadFormSpot.appendChild(uploadForm) // Remove the upload form from the DOM so its required-ness does not block submission. fillFormSpot.removeChild(fillForm) } function setFillMode() { // Make the fillable form the one in use uploadFormSpot.removeChild(uploadForm) // Remove the fillable form from the DOM so its required-ness does not block submission. fillFormSpot.appendChild(fillForm) } function setMode() { // Pick mode based on radio if (document.getElementById('metadata_upload').checked) { setUploadMode() } else { setFillMode() } } /* * Machinery for variable-length lists of input items. */ // Start in mode appropriate to selected form item. // It is important that we run this code when the page starts! The browser may // have set the radio button to whatever the state was on last page load, // instead of the default state, without raising an event, and we have to // handle that. /** * Add another form field to the group this button is part of. */ function addField(e) { // Find our parent field-group div let fieldGroup = this.parentElement // Get its keypath let keypath = fieldGroup.dataset.keypath // Find its last field child let existingFields = fieldGroup.getElementsByClassName('field') let templateField = existingFields[existingFields.length - 1] // Get its number let fieldNumber = templateField.dataset.number // Duplicate it let newField = templateField.cloneNode(true) // Increment the number and use the keypath and number to set IDs and cross // references. // TODO: Heavily dependent on the form field HTML. Maybe we want custom // elements for the labeled controlsd that know how to be list items? fieldNumber++ newField.dataset.number = fieldNumber let newID = keypath + '[' + fieldNumber + ']' let newControl = newField.getElementsByClassName('control')[0] newControl.id = newID newControl.setAttribute('name', newID) let newLabel = newField.getElementsByTagName('label')[0] newLabel.setAttribute('for', newID) // Find the minus button let minusButton = fieldGroup.getElementsByClassName('remove-field')[0] // Put new field as a child before the minus button fieldGroup.insertBefore(newField, minusButton) // Enable the minus button minusButton.classList.remove('invisible') } /** * Remove the last form field from the group button is part of. */ function removeField(e) { // Find our parent field-group div let fieldGroup = this.parentElement // Find its field children let existingFields = fieldGroup.getElementsByClassName('field') if (existingFields.length > 1) { // There is a last field we can safely remove. let lastField = existingFields[existingFields.length - 1] fieldGroup.removeChild(lastField) } if (existingFields.length <= 1) { // Collection auto-updates. Now there's only one element. Don't let the // user remove it. If they don't want it, they can leave it empty. this.classList.add('invisible') } } // Change the submit button after hitting function on_submit_button() { var f = document.getElementsByTagName('form')[0]; if(f.checkValidity()) { var elem = document.getElementById("submit"); elem.value = "Submitting..."; elem.disabled = true; f.submit(); } else { alert(document.getElementById('example').validationMessage); return false; } } // function drawMap(){ // initialize the map on the "map" div with a given center and zoom var mymap = L.map('mapid').setView([51.505, -0.09], 1); L.tileLayer('https://{s}.tile.openstreetmap.org/{z}/{x}/{y}.png', { attribution: '© OpenStreetMap contributors' }).addTo(mymap); fetch(scriptRoot + "api/getCountByGPS") .then(response => { console.log(response) return response.json(); }) .then(data => { for (var i=0; i