From 141e619929cee17018417d71111063015e73c366 Mon Sep 17 00:00:00 2001
From: AndreaGuarracino
Date: Thu, 7 Jan 2021 23:02:54 +0100
Subject: added check_sequence workflow and script

---
 workflows/yamlfa2ttl/yamlfa2ttl.cwl | 8 ++++++++
 1 file changed, 8 insertions(+)

(limited to 'workflows/yamlfa2ttl/yamlfa2ttl.cwl')

diff --git a/workflows/yamlfa2ttl/yamlfa2ttl.cwl b/workflows/yamlfa2ttl/yamlfa2ttl.cwl
index 1dce9ca..143fc9d 100644
--- a/workflows/yamlfa2ttl/yamlfa2ttl.cwl
+++ b/workflows/yamlfa2ttl/yamlfa2ttl.cwl
@@ -18,7 +18,15 @@ steps:
     in:
       path_fasta: path_fasta
       format_to_check: format_to_check
+    doc: the input has to be a valid FASTA format file
     out: []
     run: check_format.cwl
 
+  check_sequence:
+    in:
+      path_fasta: path_fasta
+    doc: the input sequence has to be enough similar to the reference
+    out: []
+    run: check_sequence.cwl
+
 outputs: []
-- 
cgit v1.2.3