From 97a820f250063d223007d3d8fea5901a1bfac77d Mon Sep 17 00:00:00 2001
From: Pjotr Prins
Date: Fri, 8 Jan 2021 01:12:49 -0600
Subject: FASTA file should not have leading space

---
 workflows/pull-data/genbank/transform-genbank-xml2yamlfa.py | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

(limited to 'workflows/pull-data')

diff --git a/workflows/pull-data/genbank/transform-genbank-xml2yamlfa.py b/workflows/pull-data/genbank/transform-genbank-xml2yamlfa.py
index 1a8035d..cdd8d2b 100755
--- a/workflows/pull-data/genbank/transform-genbank-xml2yamlfa.py
+++ b/workflows/pull-data/genbank/transform-genbank-xml2yamlfa.py
@@ -60,7 +60,7 @@ for xmlfn in args.files:
                 seq = genbank.get_sequence(id,gb)
                 print(f"    writing {fa}")
                 with open(fa,"w") as f2:
-                    f2.write(f"> {id}\n")
+                    f2.write(f">{id}\n")
                     f2.write(seq)
                 # print(seq)
         except genbank.GBError as e:
-- 
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