From 5d941e47e27a3cd2c47f8ee51f5523d180f8a5b2 Mon Sep 17 00:00:00 2001
From: Pjotr Prins
Date: Fri, 8 Jan 2021 01:48:14 -0600
Subject: Set JSON indentation

---
 workflows/pull-data/genbank/transform-genbank-xml2yamlfa.py | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

(limited to 'workflows/pull-data/genbank')

diff --git a/workflows/pull-data/genbank/transform-genbank-xml2yamlfa.py b/workflows/pull-data/genbank/transform-genbank-xml2yamlfa.py
index 1f7a428..3b9813c 100755
--- a/workflows/pull-data/genbank/transform-genbank-xml2yamlfa.py
+++ b/workflows/pull-data/genbank/transform-genbank-xml2yamlfa.py
@@ -54,7 +54,7 @@ for xmlfn in args.files:
                 jsonfn = basename + ".json"
                 with open(jsonfn, 'w') as outfile:
                     print(f"    writing {jsonfn}")
-                    json.dump(meta, outfile, indent=4)
+                    json.dump(meta, outfile, indent=2)
                 # --- write FASTA
                 fa = basename+".fa"
                 seq = genbank.get_sequence(id,gb)
-- 
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