From 6fd44b33eec7e72da5578ddef88a3ad18576bc1f Mon Sep 17 00:00:00 2001 From: Pjotr Prins Date: Sat, 2 Jan 2021 12:06:08 +0000 Subject: transform-genbank-xml2yamlfa.py rewrite --- workflows/pull-data/genbank/update-from-genbank.py | 1 + 1 file changed, 1 insertion(+) (limited to 'workflows/pull-data/genbank/update-from-genbank.py') diff --git a/workflows/pull-data/genbank/update-from-genbank.py b/workflows/pull-data/genbank/update-from-genbank.py index 3faea39..dca5563 100755 --- a/workflows/pull-data/genbank/update-from-genbank.py +++ b/workflows/pull-data/genbank/update-from-genbank.py @@ -22,6 +22,7 @@ parser = argparse.ArgumentParser() parser.add_argument('--max', type=int, help='Max queries', required=False) parser.add_argument('--ids', type=str, help='File with ids to fetch, 1 id per line', required=True) parser.add_argument('--out', type=str, help='Directory to write to', required=True) + args = parser.parse_args() ids = set() -- cgit v1.2.3