From 329a1a7e122eda41016185d1b1e8d50d97f8857b Mon Sep 17 00:00:00 2001 From: Pjotr Prins Date: Thu, 7 Jan 2021 03:17:47 -0600 Subject: Allow for xml and xml.gz files --- workflows/pull-data/genbank/genbank.py | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) (limited to 'workflows/pull-data/genbank/genbank.py') diff --git a/workflows/pull-data/genbank/genbank.py b/workflows/pull-data/genbank/genbank.py index 85d615c..026c03f 100644 --- a/workflows/pull-data/genbank/genbank.py +++ b/workflows/pull-data/genbank/genbank.py @@ -111,7 +111,8 @@ def get_metadata(id, gbseq): # print(n,file=sys.stderr) if n != 'Unpublished': institute,address = n.split(',',1) - submitter.submitter_name = institute.split(') ')[1] + if ")" in institute: + submitter.submitter_name = institute.split(')')[1] submitter.submitter_address = address.strip() except AttributeError: pass -- cgit v1.2.3