From a029c2329e748874bee88317e44d3f47547f71d8 Mon Sep 17 00:00:00 2001
From: Pjotr Prins
Date: Fri, 1 Jan 2021 10:59:56 -0600
Subject: genbank: minor fixes

---
 workflows/pull-data/genbank/README.md | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

(limited to 'workflows/pull-data/genbank/README.md')

diff --git a/workflows/pull-data/genbank/README.md b/workflows/pull-data/genbank/README.md
index 479ddc9..5597234 100644
--- a/workflows/pull-data/genbank/README.md
+++ b/workflows/pull-data/genbank/README.md
@@ -2,11 +2,11 @@
 
 ```sh
 # --- get list of IDs already in PubSeq
-sparql-fetch-ids > pubseq_ids.txt
+./sparql-fetch-ids > pubseq_ids.txt
 # --- get list of missing genbank IDs
-genbank-fetch-ids.py --skip pubseq_ids.txt > genbank_ids.txt
+./genbank-fetch-ids.py --skip pubseq_ids.txt > genbank_ids.txt
 # --- fetch XML
-update-from-genbank.py --ids genbank_ids.txt --out ~/tmp/genbank
+python3 update-from-genbank.py --ids genbank_ids.txt --out ~/tmp/genbank
 # --- Transform to YAML and FASTA
 transform-genbank-xml2yamlfa --dir ~/tmp/genbank id --outdir ~/tmp/pubseq
 ```
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