From 6fd44b33eec7e72da5578ddef88a3ad18576bc1f Mon Sep 17 00:00:00 2001 From: Pjotr Prins Date: Sat, 2 Jan 2021 12:06:08 +0000 Subject: transform-genbank-xml2yamlfa.py rewrite --- workflows/pull-data/genbank/README.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) (limited to 'workflows/pull-data/genbank/README.md') diff --git a/workflows/pull-data/genbank/README.md b/workflows/pull-data/genbank/README.md index 5597234..b5bac84 100644 --- a/workflows/pull-data/genbank/README.md +++ b/workflows/pull-data/genbank/README.md @@ -8,7 +8,7 @@ # --- fetch XML python3 update-from-genbank.py --ids genbank_ids.txt --out ~/tmp/genbank # --- Transform to YAML and FASTA -transform-genbank-xml2yamlfa --dir ~/tmp/genbank id --outdir ~/tmp/pubseq +python3 transform-genbank-xml2yamlfa --out ~/tmp/pubseq file(s) ``` # TODO -- cgit v1.2.3