From 2c6181c7eb86c0285928a434a37401d6680f9f79 Mon Sep 17 00:00:00 2001
From: Pjotr Prins
Date: Fri, 1 Jan 2021 12:24:44 +0000
Subject: genbank-fetch-ids

---
 workflows/pull-data/genbank/README.md | 4 +++-
 1 file changed, 3 insertions(+), 1 deletion(-)

(limited to 'workflows/pull-data/genbank/README.md')

diff --git a/workflows/pull-data/genbank/README.md b/workflows/pull-data/genbank/README.md
index c235be7..f442b5d 100644
--- a/workflows/pull-data/genbank/README.md
+++ b/workflows/pull-data/genbank/README.md
@@ -3,8 +3,10 @@
 ```sh
 # --- get list of IDs already in PubSeq
 sparql-fetch-ids > pubseq_ids.txt
+# --- get list of missing genbank IDs
+genbank-fetch-ids --skip pubseq_ids.txt > genbank_ids.txt
 # --- fetch XML
-update-from-genbank.py --skip pubseq_ids.txt --outdir ~/tmp/genbank
+update-from-genbank.py --ids genbank_ids.txt --outdir ~/tmp/genbank
 # --- Transform to YAML and FASTA
 transform-genbank-xml2yamlfa --dir ~/tmp/genbank id --outdir ~/tmp/pubseq
 ```
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