From c54c6624ce864daec7640d938a98f196fde4ba1e Mon Sep 17 00:00:00 2001 From: Pjotr Prins Date: Thu, 31 Dec 2020 10:51:57 +0000 Subject: genbank: started on SPARQL fetcher --- workflows/pull-data/genbank/.guix-run | 11 +++++++---- 1 file changed, 7 insertions(+), 4 deletions(-) (limited to 'workflows/pull-data/genbank/.guix-run') diff --git a/workflows/pull-data/genbank/.guix-run b/workflows/pull-data/genbank/.guix-run index 1403c69..6db7871 100644 --- a/workflows/pull-data/genbank/.guix-run +++ b/workflows/pull-data/genbank/.guix-run @@ -1,5 +1,8 @@ -#!/bin/sh -# Runner +# Set up the Guix environment with dependencies +# + +echo # next run: +echo 'export PATH=$GUIX_ENVIRONMENT/bin:$PATH' + +~/.config/guix/current/bin/guix environment guix --ad-hoc python python-biopython python-requests python-dateutil ruby -echo python3 from_genbank_to_fasta_and_yaml.py -guix environment guix --ad-hoc python python-biopython python-requests python-dateutil -- cgit v1.2.3