From ecae9863069585d88fc88b7f2a7434479f7425c1 Mon Sep 17 00:00:00 2001
From: Peter Amstutz
Date: Mon, 20 Apr 2020 17:45:17 -0400
Subject: Add readsMergeDedup.fasta to output

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
---
 workflows/pangenome-generate/pangenome-generate.cwl | 3 +++
 1 file changed, 3 insertions(+)

(limited to 'workflows/pangenome-generate')

diff --git a/workflows/pangenome-generate/pangenome-generate.cwl b/workflows/pangenome-generate/pangenome-generate.cwl
index 0cb1368..6794e2d 100644
--- a/workflows/pangenome-generate/pangenome-generate.cwl
+++ b/workflows/pangenome-generate/pangenome-generate.cwl
@@ -18,6 +18,9 @@ outputs:
   odgiRDF:
     type: File
     outputSource: odgi2rdf/rdf
+  readsMergeDedup:
+    type: File
+    outputSource: dedup/readsMergeDedup
   mergedMetadata:
     type: File
     outputSource: mergeMetadata/merged
-- 
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