From 9ddcfeacb3191638f42b08af999889d867f0f81c Mon Sep 17 00:00:00 2001
From: Peter Amstutz
Date: Mon, 20 Apr 2020 14:57:25 -0400
Subject: Better handling of duplicate sequences

Also save original fasta label in metadata
---
 workflows/pangenome-generate/seqkit-rmdup.cwl | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'workflows/pangenome-generate/seqkit-rmdup.cwl')

diff --git a/workflows/pangenome-generate/seqkit-rmdup.cwl b/workflows/pangenome-generate/seqkit-rmdup.cwl
index 07184c3..071fa66 100644
--- a/workflows/pangenome-generate/seqkit-rmdup.cwl
+++ b/workflows/pangenome-generate/seqkit-rmdup.cwl
@@ -1,14 +1,14 @@
 cwlVersion: v1.1
 class: CommandLineTool
 inputs:
-  readsFA: File[]
+  readsFA: File
 outputs:
   readsMergeDedup:
     type: File
     outputBinding:
       glob: readsMergeDedup.fasta
   dups:
-    type: File
+    type: File?
     outputBinding:
       glob: dups.txt
 requirements:
-- 
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