From 7a96d0b1b15ab28fe3a618db35364891ab5d0328 Mon Sep 17 00:00:00 2001
From: Peter Amstutz
Date: Tue, 26 May 2020 17:30:30 -0400
Subject: Can have list of sequence labels to exclude from combined fasta

refs #68

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
---
 workflows/pangenome-generate/relabel-seqs.cwl | 5 ++++-
 1 file changed, 4 insertions(+), 1 deletion(-)

(limited to 'workflows/pangenome-generate/relabel-seqs.cwl')

diff --git a/workflows/pangenome-generate/relabel-seqs.cwl b/workflows/pangenome-generate/relabel-seqs.cwl
index c1f17a4..367b9bf 100644
--- a/workflows/pangenome-generate/relabel-seqs.cwl
+++ b/workflows/pangenome-generate/relabel-seqs.cwl
@@ -3,10 +3,13 @@ class: CommandLineTool
 inputs:
   readsFA: File[]
   subjects: string[]
+  exclude:
+    type: File?
+    inputBinding: {position: 2}
   script:
     type: File
     default: {class: File, location: relabel-seqs.py}
-    inputBinding: {}
+    inputBinding: {position: 1}
 outputs:
   relabeledSeqs:
     type: File
-- 
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