From 862ae0235e3d1b105fa342cedf4aa59ae73d90c4 Mon Sep 17 00:00:00 2001
From: AndreaGuarracino
Date: Sat, 21 Nov 2020 22:00:34 +0100
Subject: added reversed_sorting parameter; typos

---
 workflows/pangenome-generate/pangenome-generate_spoa.cwl | 5 ++++-
 1 file changed, 4 insertions(+), 1 deletion(-)

(limited to 'workflows/pangenome-generate/pangenome-generate_spoa.cwl')

diff --git a/workflows/pangenome-generate/pangenome-generate_spoa.cwl b/workflows/pangenome-generate/pangenome-generate_spoa.cwl
index a46524a..4e7302d 100644
--- a/workflows/pangenome-generate/pangenome-generate_spoa.cwl
+++ b/workflows/pangenome-generate/pangenome-generate_spoa.cwl
@@ -15,6 +15,9 @@ inputs:
     type: int
     default: 100
     doc: Cells per file on component_segmentation
+  reversed_sort:
+    type: string
+    default: "true"
 outputs:
   odgiGraph:
     type: File
@@ -42,7 +45,7 @@ outputs:
 #    outputSource: segment_components/colinear_components
 steps:
   dedup_and_sort_by_quality_and_len:
-    in: {readsFA: seqs, reversed_sorting: 'true'}
+    in: {readsFA: seqs, reversed_sorting: reversed_sort}
     out: [sortedReadsFA, dups]
     run: sort_fasta_by_quality_and_len.cwl
   induceGraph:
-- 
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